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Report for CCDS19335.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19335.2 Public Mus musculus 5 Slain2 23 108 98 CCDS HistoryNCBI Gene:75991Re-query CCDS DB by CCDS ID:19335.2Re-query CCDS DB by GeneID:75991See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19335.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 19335.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143829.4 ENSMUSP00000115871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143829.4Link to Ensembl Protein Viewer:ENSMUSP00000115871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143829Re-query CCDS DB by Protein ID:ENSMUSP00000115871
Original member Current member NCBI NM_153567.3 NP_705795.2 Accepted alive Link to Nucleotide Sequence:NM_153567.3Link to Protein Sequence:NP_705795.2Re-query CCDS DB by Nucleotide ID:NM_153567Re-query CCDS DB by Protein ID:NP_705795Link to BLAST:NP_705795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705795.2 607 Q8CI08-2 607 100% 0 0

Chromosomal Locations for CCDS 19335.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72914625 72915013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72941292 72941440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72948562 72948726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72955327 72955488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72957293 72957652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72958149 72958286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72965804 72965881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72974531 72974846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72975997 72976063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGGAGGACGTTAACTCCAATGTGAACGCGGACCAGGAGGTGCGGAAGCTGCAGGAGCTGGTGAAGAAGC
TGGAGAAGCAGAACGAGCAGCTGAGGAGCCGCTCGGGAGCCGTGCAGGGTGCAGGCCTCCTCGGGCCCGG
CAGCCCAGCTCGGGTCGGCGTGTCCACCCCTTCGTCGGGCGCGGCGTCCCCTCGGGGCTTCCCGCTGGGC
CTGGGCGCCAAGGCCAGCGGCGGGGCGGGCTCCGGCCCGCGACGGACCAGCAGCGAGGACCTGCGGGACG
CCACCTCCTTGCTGGCGGCCGGCGAGGGAGGCTTGCTGGACGAGGTAGAGCCGCTGCGGCCCGACGAGCT
GGAGCGCTTGTCAGGCTGGGAGGAGGAAGAGGAGAGCTGGTTGTACTCATCACCAAAGAAAAAACTCACA
CCAATGCAGAAATCTGTCAGTCCATTAGTTTGGTGCAGGCAAGTTTTGGATTACCCAAGTCCTGATGTGG
AGTGTGCTAAAAAGTCCCTTATCCACAAACTTGATCAAACTATGTCAGCTCTCAAGAGGCAAAATTTATA
CAATAATCCTTTCAACTCTGTGAGTTACTCAAATTCTTATAGTCCAAATGCCAGTAGCCCATACAGCAGT
GGCTTCAACTCTCCATCCTCAACACCAGTGCGACCTCCCATAGTCAAGCAGCTTATACTTCCTGGAAATT
CAGGTAACTTCAAAAGTTCATCAGATAGAAACCCTCCACTCAGCCCTCAGTCCTCTATAGATAGTGAGTT
AAGTGCTTCAGAATTAGATGAAGATTCAATTGGATCCAACTATAAGCTAAATGATGTAACTGATGTGCAG
ATTCTAGCGCGGATGCAGGAAGAAAGTCTCCGGCAAGAATATGCAGCCAGCACCTCTCGCCGCAGCTCTG
GTTCATCTTGCAATTCTACGAGGCGGGGCACTTTTAGTGATCAGGAGCTGGACGCCCAGAGCTTGGATGA
TGAAGATGACAGTCTGCAGCATGCAGTACACCCTGCCCTTAATAGGTTTTCTCCATCCCCACGGAATTCA
CCACGACCATCTCCTAAGCAGTCGCCTCGAAATTCACCTCGTTCACGGTCTCCTGCCCGGGGAATAGAAT
ACAGTAGAGCGTCCCCACAGCCTATGATTAGCCGCTTGCAGCAGCCTCGCCTTTCCCTCCAAGGCCATCC
CACAGATTTACAGACGAGCAATGTTAAAAATGAAGAAAAACTTAGACGCAGTCTTCCAAACCTATCCCGA
ACATCGAGCACACAGGTTGACTCTGTGAAAAGCAGTAGAAGTGACTCCAATTTTCAAGTGCCAAATGGAG
GAATACCTCGAATGCAGCCTCAGGCTTCAGCCACTTCTCAAAGGCTGAAAAGTTTGCCTCGTACTTCCCT
CAAAGCCAAACAGTTGCTTCCAACTTCATCTACAAAAAGAGTACCTTCTCCAGGCAAATTCCGCTCCCCT
GCAGCACCGTCTCCATTGGCTCTTCGGCAACCAGTGAAAGCGTTTAGTAACCATGGCTCTGGTTCTGGTA
GCCAAGAAACTACCCAGTTCACACAAACCACCTCCTCACCTGGGCCTCCTGTGGTGCAGAACTCAGCCCC
AGCAAACCCTTCCAGCAATATCAACAGTGCCACTCTAACCAGACCTGCAGGGACAACTGCAATGAGGAGT
GGCCTGCCCCGGCCAAGCGCCCCTTCTGCGGGGGGCATCCCAGTGCCTCGCAGCAAGCTTGTACAGCCTG
TTCGAAGATCATTGCCAGCTCCTAAAAGTTATGGTAGCATGAAAGATGACAGTTGGAAAGACGGCTGTTA
CTGA

Translation (607 aa):
MEDVNSNVNADQEVRKLQELVKKLEKQNEQLRSRSGAVQGAGLLGPGSPARVGVSTPSSGAASPRGFPLG
LGAKASGGAGSGPRRTSSEDLRDATSLLAAGEGGLLDEVEPLRPDELERLSGWEEEEESWLYSSPKKKLT
PMQKSVSPLVWCRQVLDYPSPDVECAKKSLIHKLDQTMSALKRQNLYNNPFNSVSYSNSYSPNASSPYSS
GFNSPSSTPVRPPIVKQLILPGNSGNFKSSSDRNPPLSPQSSIDSELSASELDEDSIGSNYKLNDVTDVQ
ILARMQEESLRQEYAASTSRRSSGSSCNSTRRGTFSDQELDAQSLDDEDDSLQHAVHPALNRFSPSPRNS
PRPSPKQSPRNSPRSRSPARGIEYSRASPQPMISRLQQPRLSLQGHPTDLQTSNVKNEEKLRRSLPNLSR
TSSTQVDSVKSSRSDSNFQVPNGGIPRMQPQASATSQRLKSLPRTSLKAKQLLPTSSTKRVPSPGKFRSP
AAPSPLALRQPVKAFSNHGSGSGSQETTQFTQTTSSPGPPVVQNSAPANPSSNINSATLTRPAGTTAMRS
GLPRPSAPSAGGIPVPRSKLVQPVRRSLPAPKSYGSMKDDSWKDGCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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