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Report for CCDS28350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28350.1 Public Mus musculus 16 Dyrk1a 23 108 98 CCDS HistoryNCBI Gene:13548Re-query CCDS DB by CCDS ID:28350.1Re-query CCDS DB by GeneID:13548See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023614.4 ENSMUSP00000023614.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023614.4Link to Ensembl Protein Viewer:ENSMUSP00000023614.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023614Re-query CCDS DB by Protein ID:ENSMUSP00000023614
Original member Current member EBI ENSMUST00000119878.7 ENSMUSP00000113660.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119878.7Link to Ensembl Protein Viewer:ENSMUSP00000113660.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119878Re-query CCDS DB by Protein ID:ENSMUSP00000113660
Original member Current member NCBI NM_001113389.1 NP_001106860.1 Accepted alive Link to Nucleotide Sequence:NM_001113389.1Link to Protein Sequence:NP_001106860.1Re-query CCDS DB by Nucleotide ID:NM_001113389Re-query CCDS DB by Protein ID:NP_001106860Link to BLAST:NP_001106860.1
Original member Current member NCBI NM_007890.2 NP_031916.1 Accepted alive Link to Nucleotide Sequence:NM_007890.2Link to Protein Sequence:NP_031916.1Re-query CCDS DB by Nucleotide ID:NM_007890Re-query CCDS DB by Protein ID:NP_031916Link to BLAST:NP_031916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106860.1 763 Q61214 763 100% 0 0
NP_031916.1 763 Q61214 763 100% 0 0

Chromosomal Locations for CCDS 28350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94611495 94611504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94659497 94659693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94663742 94663861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94665916 94666104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94668805 94668952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94671303 94671589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94673337 94673483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94677452 94677592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94685035 94685341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94686479 94686603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94691581 94692201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2292 nt):
ATGCATACAGGAGGAGAGACTTCAGCATGCAAACCTTCATCTGTCCGGCTTGCACCGTCGTTCTCATTCC
ATGCTGCTGGCCTTCAGATGGCTGCACAGATGCCCCACTCACACCAGTACAGTGACCGTCGCCAGCCGAG
CATAAGTGACCAGCAGGTGTCTGCCTTACCATATTCTGACCAGATTCAGCAACCTCTAACTAACCAGGTG
ATGCCTGACATTGTCATGTTACAGAGGCGGATGCCCCAAACCTTCCGTGATCCAGCAACTGCTCCTCTGA
GAAAACTCTCTGTGGACTTGATCAAAACATACAAGCATATTAATGAGGTTTACTATGCAAAAAAGAAGCG
AAGACACCAACAGGGCCAGGGGGACGATTCCAGTCATAAGAAGGAGCGGAAGGTTTACAATGATGGTTAC
GATGATGATAACTATGATTATATTGTAAAAAACGGGGAAAAGTGGATGGATCGGTATGAAATCGACTCCT
TAATAGGCAAAGGTTCATTTGGACAGGTTGTGAAAGCTTATGACAGAGTGGAGCAAGAATGGGTCGCCAT
TAAAATCATCAAGAACAAGAAAGCGTTTCTGAATCAAGCCCAGATAGAAGTGCGGCTGCTTGAGCTCATG
AACAAACACGACACTGAAATGAAGTACTACATAGTGCATTTGAAACGCCACTTTATGTTTCGAAACCATC
TCTGTTTAGTGTTTGAAATGCTGTCCTATAATCTCTATGATTTGTTGAGAAACACCAACTTCCGAGGGGT
CTCTTTGAACCTAACACGAAAGTTTGCGCAACAGATGTGCACAGCATTGCTTTTTCTTGCGACTCCAGAA
CTTAGTATCATTCACTGTGACTTAAAGCCTGAGAACATCCTTCTGTGTAACCCCAAACGGAGTGCAATCA
AGATTGTTGATTTTGGCAGCTCTTGTCAGTTGGGGCAGAGGATATACCAGTATATTCAGAGTCGCTTTTA
TCGGTCTCCAGAGGTGCTACTGGGAATGCCTTATGACCTTGCTATCGACATGTGGTCCCTTGGATGTATC
TTGGTTGAAATGCACACTGGAGAGCCTCTGTTCAGTGGTGCCAATGAGGTCGATCAGATGAATAAAATAG
TGGAAGTCTTGGGCATCCCACCTGCTCATATTCTTGACCAAGCACCGAAAGCAAGAAAGTTCTTTGAGAA
GTTGCCCGATGGCACTTGGAGCTTAAAGAAGACCAAAGATGGAAAACGGGAGTACAAACCACCAGGAACC
CGTAAACTTCATAATATTCTTGGAGTAGAAACAGGAGGACCTGGCGGGCGGCGTGCTGGGGAATCGGGTC
ATACTGTAGCTGACTACTTGAAGTTCAAAGACCTCATTTTAAGGATGCTTGATTATGACCCCAAAACTCG
GATTCAACCTTATTATGCCCTGCAGCACAGTTTTTTCAAGAAAACAGCTGATGAAGGTACCAACACAAGT
AACAGTGTGTCTACCAGCCCTGCGATGGAGCAGTCTCAGTCTTCAGGCACCACCTCCAGCACCTCCTCCA
GCTCAGGTGGATCCTCGGGAACGAGTAACAGTGGGAGAGCCAGGTCGGATCCGACGCACCAGCATCGACA
CAGCGGTGGACACTTCGCTGCTGCTGTCCAGGCCATGGACTGTGAGACACACAGTCCCCAGGTGCGCCAG
CAGTTTCCGGCTCCTCTGGGATGGTCAGGCACTGAAGCTCCTACACAAGTCACTGTTGAAACTCATCCTG
TTCAAGAGACAACCTTTCATGTAGCCCCCCAGCAGAACGCATTGCATCATCACCATGGAAACAGTTCCCA
TCACCACCACCACCACCATCACCACCACCACCACCATGGACAGCAAGCCTTGGGTAACCGGACCAGGCCA
AGGGTCTACAATTCTCCAACAAATAGCTCCTCTACCCAGGATTCTATGGAGGTTGGCCACAGTCACCACT
CCATGACATCCCTGTCTTCCTCAACAACTTCTTCCTCGACATCTTCCTCCTCTACTGGTAATCAAGGCAA
TCAGGCCTATCAGAACCGCCCAGTGGCTGCTAACACCTTGGACTTTGGACAGAATGGAGCTATGGACGTT
AATTTGACCGTCTACTCCAATCCCCGCCAAGAGACTGGCATAGCTGGACATCCAACATACCAATTTTCTG
CTAATACAGGTCCTGCACATTACATGACTGAAGGACATCTGGCGATGAGACAAGGGGCTGATAGAGAAGA
GTCTCCCATGACAGGAGTTTGTGTGCAACAGAGTCCTGTAGCTAGCTCGTGA

Translation (763 aa):
MHTGGETSACKPSSVRLAPSFSFHAAGLQMAAQMPHSHQYSDRRQPSISDQQVSALPYSDQIQQPLTNQV
MPDIVMLQRRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKKKRRHQQGQGDDSSHKKERKVYNDGY
DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELM
NKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPE
LSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCI
LVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWSLKKTKDGKREYKPPGT
RKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTADEGTNTS
NSVSTSPAMEQSQSSGTTSSTSSSSGGSSGTSNSGRARSDPTHQHRHSGGHFAAAVQAMDCETHSPQVRQ
QFPAPLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGNRTRP
RVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGNQAYQNRPVAANTLDFGQNGAMDV
NLTVYSNPRQETGIAGHPTYQFSANTGPAHYMTEGHLAMRQGADREESPMTGVCVQQSPVASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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