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Report for CCDS48579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48579.1 Public Mus musculus 10 Vps26a 23 108 98 CCDS HistoryNCBI Gene:30930Re-query CCDS DB by CCDS ID:48579.1Re-query CCDS DB by GeneID:30930See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092473.4 ENSMUSP00000090130.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092473.4Link to Ensembl Protein Viewer:ENSMUSP00000090130.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092473Re-query CCDS DB by Protein ID:ENSMUSP00000090130
Original member Current member NCBI NM_001113355.1 NP_001106826.1 Accepted alive Link to Nucleotide Sequence:NM_001113355.1Link to Protein Sequence:NP_001106826.1Re-query CCDS DB by Nucleotide ID:NM_001113355Re-query CCDS DB by Protein ID:NP_001106826Link to BLAST:NP_001106826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106826.1 359 P40336-2 359 100% 0 0

Chromosomal Locations for CCDS 48579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62456745 62456858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62458924 62459066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62463691 62463759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62464632 62464738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62468290 62468454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62469901 62470057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62471060 62471135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62480558 62480707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62486378 62486476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGTCGGAGCCTCTGCCCGCCTTCCTCGACCGGCTGTGGGGACCCTGGCTGGGCACCCGCAGCCCGCCCA
GCCGGAGCTCGGCAGCCTCGCCTTCCAAGAGTTTTCTTGGAGGCTTTTTTGGTCCCATTTGTGAGATTGA
TGTTGCCCTTAATGATGGGGAAACCAGGAAAATGGCAGAAATGAAAACTGAGGATGGCAAAGTAGAAAAA
CACTATCTCTTCTATGATGGCGAGTCTGTCTCAGGAAAGGTAAACCTAGCCTTTAAGCAGCCTGGAAAGA
GGCTAGAGCATCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAGCTTTTCAATGACAAGAGTAATAC
TCATGAATTTGTAAACCTAGTGAAGGAACTAGCCTTGCCTGGAGAACTGACTCAGAGCAGAAGCTATGAC
TTTGAATTTATGCAAGTTGAAAAGCCATATGAGTCATACATCGGTGCCAATGTCCGCCTGAGGTATTTTC
TTAAGGTGACAATTGTGAGAAGATTGACAGACTTAGTGAAAGAGTACGATCTTATTGTTCATCAGCTAGC
CACCTATCCTGATGTCAACAACTCTATTAAAATGGAAGTGGGCATTGAAGACTGTCTGCACATAGAGTTT
GAATATAATAAGTCCAAGTATCATTTAAAGGATGTAATTGTTGGAAAAATTTACTTCTTATTAGTAAGAA
TAAAAATACAACACATGGAATTACAGCTGATCAAGAAAGAGATCACAGGAATTGGACCCAGCACCACAAC
AGAGACAGAAACAATCGCTAAGTATGAAATAATGGATGGGGCGCCAGTAAAAGGAGAATCTATTCCGATA
AGATTGTTCTTAGCAGGGTATGACCCAACCCCCACGATGAGAGATGTGAACAAGAAGTTTTCAGTAAGGT
ACTTTCTAAACCTCGTGCTTGTTGATGAGGAGGACCGAAGGTACTTCAAGCAGCAGGAGATCATCCTGTG
GAGAAAAGCACCCGAGAAACTGAGAAAACAGAGGACGAACTTTCACCAGCGGTTTGAATCTCCAGACTCG
CAGGCCTCTGCGGAGCAGCCTGAGATGTAA

Translation (359 aa):
MSEPLPAFLDRLWGPWLGTRSPPSRSSAASPSKSFLGGFFGPICEIDVALNDGETRKMAEMKTEDGKVEK
HYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYD
FEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEF
EYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPI
RLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPDS
QASAEQPEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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