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Report for CCDS34852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34852.1 Public Homo sapiens 8 SLC7A2 24 110 108 CCDS HistoryNCBI Gene:6542Re-query CCDS DB by CCDS ID:34852.1Re-query CCDS DB by GeneID:6542See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000494857.6 ENSP00000419140.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000494857.6Link to Ensembl Protein Viewer:ENSP00000419140.2Re-query CCDS DB by Nucleotide ID:ENST00000494857Re-query CCDS DB by Protein ID:ENSP00000419140
Original member Current member EBI ENST00000522656.5 ENSP00000430464.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522656.5Link to Ensembl Protein Viewer:ENSP00000430464.1Re-query CCDS DB by Nucleotide ID:ENST00000522656Re-query CCDS DB by Protein ID:ENSP00000430464
Original member Current member EBI ENST00000640220.1 ENSP00000492016.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640220.1Link to Ensembl Protein Viewer:ENSP00000492016.2Re-query CCDS DB by Nucleotide ID:ENST00000640220Re-query CCDS DB by Protein ID:ENSP00000492016
Original member Current member NCBI NM_001008539.4 NP_001008539.3 Accepted alive Link to Nucleotide Sequence:NM_001008539.4Link to Protein Sequence:NP_001008539.3Re-query CCDS DB by Nucleotide ID:NM_001008539Re-query CCDS DB by Protein ID:NP_001008539Link to BLAST:NP_001008539.3
Original member Current member NCBI NM_001370338.1 NP_001357267.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370338.1Link to Protein Sequence:NP_001357267.1Re-query CCDS DB by Nucleotide ID:NM_001370338Re-query CCDS DB by Protein ID:NP_001357267Link to BLAST:NP_001357267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008539.3 658 P52569-1 658 100% 0 0
NP_001357267.1 658 P52569-1 658 100% 0 0

Chromosomal Locations for CCDS 34852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 17543340 17543715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17544451 17544606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17548678 17548843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17550301 17550434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17551764 17551986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17554560 17554699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17558295 17558397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17560328 17560533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17561944 17562110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17563603 17563711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17564950 17565146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGATTCCTTGCAGAGCCGCGCTGACCTTTGCCCGATGTCTGATCCGGAGAAAAATCGTGACCCTGGACA
GTCTAGAAGACACCAAATTATGCCGCTGCTTATCCACCATGGACCTCATTGCCCTGGGCGTTGGAAGCAC
CCTTGGGGCCGGGGTTTATGTCCTCGCTGGGGAGGTGGCCAAGGCAGACTCGGGCCCCAGCATCGTGGTG
TCCTTCCTCATTGCTGCCCTGGCTTCAGTGATGGCTGGCCTCTGCTATGCCGAATTTGGGGCCCGTGTTC
CCAAGACGGGGTCTGCATATTTGTACACCTACGTGACTGTCGGAGAGCTGTGGGCCTTCATCACTGGCTG
GAATCTCATTTTATCGTATGTGATAGGTACATCAAGTGTTGCAAGAGCCTGGAGTGGCACCTTTGATGAA
CTTCTTAGCAAACAGATTGGTCAGTTTTTGAGGACATACTTCAGAATGAATTACACTGGTCTTGCAGAAT
ATCCCGATTTTTTTGCTGTGTGCCTTATATTACTTCTAGCAGGTCTTTTGTCTTTTGGAGTAAAAGAGTC
TGCTTGGGTGAATAAAGTCTTCACAGCTGTTAATATTCTCGTCCTTCTGTTTGTGATGGTTGCTGGGTTT
GTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAGAG
AGCCACCTTCTGAAAACGGAACAAGTATCTATGGGGCTGGTGGCTTTATGCCTTATGGCTTTACGGGAAC
GTTGGCTGGTGCTGCAACTTGCTTTTATGCCTTTGTGGGATTTGACTGCATTGCAACAACTGGTGAAGAA
GTTCGGAATCCCCAGAAAGCTATTCCCATTGGAATTGTGACGTCTTTGCTTGTTTGCTTTATGGCCTATT
TTGGGGTCTCTGCAGCTTTAACACTTATGATGCCGTACTACCTCCTCGATGAAAAAAGCCCCCTTCCTGT
AGCGTTTGAATATGTGGGATGGGGTCCTGCCAAATATGTCGTCGCAGCTGGTTCTCTCTGCGCCTTGTCA
ACAAGTCTTCTTGGATCCATTTTCCCAATGCCTCGTGTAATCTATGCTATGGCGGAGGATGGGTTGCTTT
TCAAATGTCTAGCTCAAATCAATTCCAAAACGAAGACACCAATAATTGCTACTTTATCATCGGGTGCAGT
GGCAGCTTTGATGGCCTTTCTGTTTGACCTGAAGGCGCTTGTGGACATGATGTCCATTGGCACACTCATG
GCCTACTCTCTGGTGGCAGCCTGTGTTCTCATCCTCAGGTACCAGCCTGGCTTATCTTACGACCAGCCCA
AATGTTCTCCTGAGAAAGATGGTCTGGGATCGTCTCCCAGGGTAACCTCGAAGAGTGAGTCCCAGGTCAC
CATGCTGCAGAGACAGGGCTTCAGCATGCGGACCCTCTTCTGCCCCTCCCTTCTGCCAACACAGCAGTCA
GCTTCTCTCGTGAGCTTTCTGGTAGGATTCCTAGCTTTCCTCGTGTTGGGCCTGAGTGTCTTGACCACTT
ACGGAGTTCATGCCATCACCAGGCTGGAGGCCTGGAGCCTCGCTCTCCTCGCGCTGTTTCTTGTTCTCTT
CGTTGCCATCGTTCTCACCATCTGGAGGCAGCCCCAGAATCAGCAAAAAGTAGCCTTCATGGTTCCATTC
TTACCATTTTTGCCAGCGTTCAGCATCTTGGTGAACATTTACTTGATGGTCCAGTTAAGTGCAGACACTT
GGGTCAGATTCAGCATTTGGATGGCAATTGGCTTCCTGATTTACTTTTCTTATGGCATTAGACACAGCCT
GGAGGGTCATCTGAGAGATGAAAACAATGAAGAAGATGCTTATCCAGACAACGTTCATGCAGCAGCAGAA
GAAAAATCTGCCATTCAAGCAAATGACCATCACCCAAGAAATCTCAGTTCACCTTTCATATTCCATGAAA
AGACAAGTGAATTCTAA

Translation (658 aa):
MIPCRAALTFARCLIRRKIVTLDSLEDTKLCRCLSTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVV
SFLIAALASVMAGLCYAEFGARVPKTGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDE
LLSKQIGQFLRTYFRMNYTGLAEYPDFFAVCLILLLAGLLSFGVKESAWVNKVFTAVNILVLLFVMVAGF
VKGNVANWKISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEE
VRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLPVAFEYVGWGPAKYVVAAGSLCALS
TSLLGSIFPMPRVIYAMAEDGLLFKCLAQINSKTKTPIIATLSSGAVAALMAFLFDLKALVDMMSIGTLM
AYSLVAACVLILRYQPGLSYDQPKCSPEKDGLGSSPRVTSKSESQVTMLQRQGFSMRTLFCPSLLPTQQS
ASLVSFLVGFLAFLVLGLSVLTTYGVHAITRLEAWSLALLALFLVLFVAIVLTIWRQPQNQQKVAFMVPF
LPFLPAFSILVNIYLMVQLSADTWVRFSIWMAIGFLIYFSYGIRHSLEGHLRDENNEEDAYPDNVHAAAE
EKSAIQANDHHPRNLSSPFIFHEKTSEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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