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Report for CCDS13007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13007.1 Public Homo sapiens 20 SLC52A3 24 110 108 CCDS HistoryNCBI Gene:113278Re-query CCDS DB by CCDS ID:13007.1Re-query CCDS DB by GeneID:113278See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13007.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217254.11 ENSP00000217254.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000217254.11Link to Ensembl Protein Viewer:ENSP00000217254.7Re-query CCDS DB by Nucleotide ID:ENST00000217254Re-query CCDS DB by Protein ID:ENSP00000217254
Original member Current member EBI ENST00000488495.3 ENSP00000494009.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488495.3Link to Ensembl Protein Viewer:ENSP00000494009.1Re-query CCDS DB by Nucleotide ID:ENST00000488495Re-query CCDS DB by Protein ID:ENSP00000494009
Original member Current member EBI ENST00000645534.1 ENSP00000494193.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000645534.1Link to Ensembl Protein Viewer:ENSP00000494193.1Re-query CCDS DB by Nucleotide ID:ENST00000645534Re-query CCDS DB by Protein ID:ENSP00000494193
Original member Current member NCBI NM_001370085.1 NP_001357014.1 Accepted alive Link to Nucleotide Sequence:NM_001370085.1Link to Protein Sequence:NP_001357014.1Re-query CCDS DB by Nucleotide ID:NM_001370085Re-query CCDS DB by Protein ID:NP_001357014Link to BLAST:NP_001357014.1
Original member Current member NCBI NM_001370086.1 NP_001357015.1 Accepted alive Link to Nucleotide Sequence:NM_001370086.1Link to Protein Sequence:NP_001357015.1Re-query CCDS DB by Nucleotide ID:NM_001370086Re-query CCDS DB by Protein ID:NP_001357015Link to BLAST:NP_001357015.1
Original member Current member NCBI NM_033409.4 NP_212134.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033409.4Link to Protein Sequence:NP_212134.3Re-query CCDS DB by Nucleotide ID:NM_033409Re-query CCDS DB by Protein ID:NP_212134Link to BLAST:NP_212134.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357014.1 469 Q9NQ40-1 469 100% 0 0
NP_001357015.1 469 Q9NQ40-1 469 100% 0 0
NP_212134.3 469 Q9NQ40-1 469 100% 0 0

Chromosomal Locations for CCDS 13007.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 761026 761238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 761701 761824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 763498 764003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 765208 765774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCCTTCCTGATGCACCTGCTGGTCTGCGTCTTCGGAATGGGCTCCTGGGTGACCATCAATGGGCTCT
GGGTAGAGCTGCCCCTGCTGGTGATGGAGCTGCCCGAGGGCTGGTACCTGCCCTCCTACCTCACGGTGGT
CATCCAGCTGGCCAACATCGGGCCCCTCCTGGTCACCCTGCTCCATCACTTCCGGCCCAGCTGCCTTTCC
GAAGTGCCCATCATCTTCACCCTGCTGGGCGTGGGAACCGTCACCTGCATCATCTTTGCCTTCCTCTGGA
ATATGACCTCCTGGGTGCTGGACGGCCACCACAGCATCGCCTTCTTGGTCCTCACCTTCTTCCTGGCCCT
GGTGGACTGCACCTCTTCAGTGACCTTCCTGCCGTTCATGAGCCGGCTGCCCACCTACTACCTCACCACC
TTCTTTGTGGGTGAAGGACTCAGCGGCCTCTTGCCCGCCCTGGTGGCTCTTGCCCAGGGCTCCGGTCTCA
CTACCTGCGTCAATGTCACTGAGATATCAGACAGCGTACCAAGCCCTGTACCCACGAGGGAGACTGACAT
CGCACAGGGAGTTCCCAGAGCTTTGGTGTCCGCCCTCCCCGGAATGGAAGCACCCTTGTCCCACCTGGAG
AGCCGCTACCTTCCCGCCCACTTCTCACCCCTGGTCTTCTTCCTCCTCCTATCCATCATGATGGCCTGCT
GCCTCGTGGCGTTCTTTGTCCTCCAGCGTCAACCCAGGTGCTGGGAGGCTTCCGTGGAAGACCTCCTCAA
TGACCAGGTCACCCTCCACTCCATCCGGCCGCGGGAAGAGAATGACTTGGGCCCTGCAGGCACGGTGGAC
AGCAGCCAGGGCCAGGGGTATCTAGAGGAGAAAGCAGCCCCCTGCTGCCCGGCGCACCTGGCCTTCATCT
ATACCCTGGTGGCCTTCGTCAACGCGCTCACCAACGGCATGCTGCCCTCTGTGCAGACCTACTCCTGCCT
GTCCTATGGGCCAGTTGCCTACCACCTGGCTGCCACCCTCAGCATTGTGGCCAACCCTCTTGCCTCGTTG
GTCTCCATGTTCCTGCCTAACAGGTCTCTGCTGTTCCTGGGGGTCCTCTCCGTGCTTGGGACCTGCTTTG
GGGGCTACAACATGGCCATGGCGGTGATGAGCCCCTGCCCCCTCTTGCAGGGCCACTGGGGTGGGGAAGT
CCTCATTGTGGCCTCGTGGGTGCTTTTCAGCGGCTGCCTCAGTTACGTCAAGGTGATGCTGGGCGTGGTC
CTGCGCGACCTCAGCCGCAGCGCCCTCTTGTGGTGCGGGGCGGCGGTGCAGCTGGGCTCGCTGCTCGGAG
CGCTGCTCATGTTCCCTCTGGTCAACGTGCTGCGGCTCTTCTCGTCCGCGGACTTCTGCAATCTGCACTG
TCCAGCCTAG

Translation (469 aa):
MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHHFRPSCLS
EVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTT
FFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLE
SRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVD
SSQGQGYLEEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASL
VSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVV
LRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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