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Report for CCDS15016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15016.1 Public Mus musculus 1 Idh1 23 108 98 CCDS HistoryNCBI Gene:15926Re-query CCDS DB by CCDS ID:15016.1Re-query CCDS DB by GeneID:15926See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097709.10 ENSMUSP00000095316.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097709.10Link to Ensembl Protein Viewer:ENSMUSP00000095316.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097709Re-query CCDS DB by Protein ID:ENSMUSP00000095316
Original member Current member EBI ENSMUST00000169032.7 ENSMUSP00000127307.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169032.7Link to Ensembl Protein Viewer:ENSMUSP00000127307.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169032Re-query CCDS DB by Protein ID:ENSMUSP00000127307
Original member Current member NCBI NM_001111320.1 NP_001104790.1 Accepted alive Link to Nucleotide Sequence:NM_001111320.1Link to Protein Sequence:NP_001104790.1Re-query CCDS DB by Nucleotide ID:NM_001111320Re-query CCDS DB by Protein ID:NP_001104790Link to BLAST:NP_001104790.1
Original member Current member NCBI NM_010497.3 NP_034627.3 Accepted alive Link to Nucleotide Sequence:NM_010497.3Link to Protein Sequence:NP_034627.3Re-query CCDS DB by Nucleotide ID:NM_010497Re-query CCDS DB by Protein ID:NP_034627Link to BLAST:NP_034627.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104790.1 414 O88844 414 100% 0 0
NP_034627.3 414 O88844 414 100% 0 0

Chromosomal Locations for CCDS 15016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 65159465 65159555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65161050 65161212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65161800 65161940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65165100 65165251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65166107 65166284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65168499 65168604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65170959 65171250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65175231 65175352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGTCCAGAAAAATCCAAGGAGGTTCTGTGGTGGAGATGCAAGGAGATGAAATGACACGAATCATTTGGG
AATTGATTAAGGAAAAACTTATTCTTCCCTATGTGGAACTGGATCTGCATAGCTATGATTTAGGCATAGA
GAATCGTGATGCCACCAATGACCAGGTCACCAAAGATGCTGCAGAGGCTATAAAGAAATACAACGTGGGC
GTCAAGTGTGCTACCATCACCCCCGATGAGAAGAGGGTTGAAGAATTCAAGTTGAAACAAATGTGGAAAT
CCCCAAATGGCACCATCCGAAACATTCTGGGTGGCACTGTCTTCAGGGAAGCTATTATCTGCAAAAATAT
CCCCCGGCTAGTGACAGGCTGGGTAAAACCCATCATCATTGGCCGACATGCATATGGGGACCAATACAGA
GCAACTGATTTTGTTGTTCCTGGGCCTGGAAAAGTAGAGATAACCTACACACCAAAAGATGGAACTCAGA
AGGTGACATACATGGTACATGACTTTGAAGAAGGTGGTGGTGTTGCCATGGGCATGTACAACCAGGATAA
GTCAATTGAAGACTTTGCACACAGTTCCTTCCAAATGGCTCTGTCCAAGGGCTGGCCTTTGTATCTCAGC
ACCAAGAACACTATTCTGAAGAAGTATGATGGGCGTTTCAAAGACATCTTCCAGGAGATCTATGACAAGA
AATACAAGTCCCAGTTTGAAGCTCAGAAGATCTGCTATGAACACAGGCTCATAGATGACATGGTGGCCCA
AGCTATGAAGTCCGAGGGAGGCTTCATCTGGGCCTGTAAGAATTACGATGGGGATGTGCAGTCAGACTCA
GTCGCCCAAGGTTATGGCTCCCTTGGCATGATGACCAGTGTGCTGATTTGTCCAGATGGTAAGACGGTAG
AAGCAGAGGCTGCCCATGGCACTGTCACACGTCACTACCGCATGTACCAGAAAGGGCAAGAGACGTCCAC
CAACCCCATTGCTTCCATTTTTGCCTGGTCCCGAGGGTTAGCCCACAGAGCAAAGCTTGATAACAATACT
GAGCTCAGCTTCTTCGCAAAGGCTTTGGAAGACGTCTGCATTGAGACCATTGAGGCTGGCTTTATGACTA
AGGACTTGGCTGCTTGCATTAAAGGCTTACCCAATGTACAACGTTCTGACTACTTGAATACATTTGAGTT
TATGGACAAACTTGGAGAAAACTTGAAGGCCAAATTAGCTCAGGCCAAACTTTAA

Translation (414 aa):
MSRKIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVG
VKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYR
ATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLS
TKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQKICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDS
VAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNT
ELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLAQAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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