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Report for CCDS81923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81923.1 Public Homo sapiens 16 RPUSD1 24 110 108 CCDS HistoryNCBI Gene:113000Re-query CCDS DB by CCDS ID:81923.1Re-query CCDS DB by GeneID:113000See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567114.5 ENSP00000455862.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567114.5Link to Ensembl Protein Viewer:ENSP00000455862.1Re-query CCDS DB by Nucleotide ID:ENST00000567114Re-query CCDS DB by Protein ID:ENSP00000455862
Original member Current member NCBI NM_001324412.2 NP_001311341.1 Accepted alive Link to Nucleotide Sequence:NM_001324412.2Link to Protein Sequence:NP_001311341.1Re-query CCDS DB by Nucleotide ID:NM_001324412Re-query CCDS DB by Protein ID:NP_001311341Link to BLAST:NP_001311341.1
Original member Current member NCBI NM_001324413.2 NP_001311342.1 Accepted alive Link to Nucleotide Sequence:NM_001324413.2Link to Protein Sequence:NP_001311342.1Re-query CCDS DB by Nucleotide ID:NM_001324413Re-query CCDS DB by Protein ID:NP_001311342Link to BLAST:NP_001311342.1
Original member Current member NCBI NM_001324414.2 NP_001311343.1 Accepted alive Link to Nucleotide Sequence:NM_001324414.2Link to Protein Sequence:NP_001311343.1Re-query CCDS DB by Nucleotide ID:NM_001324414Re-query CCDS DB by Protein ID:NP_001311343Link to BLAST:NP_001311343.1
Original member Current member NCBI NM_001324415.2 NP_001311344.1 Accepted alive Link to Nucleotide Sequence:NM_001324415.2Link to Protein Sequence:NP_001311344.1Re-query CCDS DB by Nucleotide ID:NM_001324415Re-query CCDS DB by Protein ID:NP_001311344Link to BLAST:NP_001311344.1
Original member Current member NCBI NM_001369660.1 NP_001356589.1 Accepted alive Link to Nucleotide Sequence:NM_001369660.1Link to Protein Sequence:NP_001356589.1Re-query CCDS DB by Nucleotide ID:NM_001369660Re-query CCDS DB by Protein ID:NP_001356589Link to BLAST:NP_001356589.1

Chromosomal Locations for CCDS 81923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 785950 786377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 786827 786928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 787077 787098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGTGCATCGAGGGCTCGCAGGGTTGTGAGAACCCAAAGCCAAGCCTCACAGATCTCGTGGTTCTGGAAC
ACGGGCTGTACGCAGGCGATCCTGTCTCCAAAGTGCTGCTGAAGCCGCTCACGGGCCGGACACACCAGCT
GCGCGTGCACTGCAGTGCCCTGGGCCACCCCGTGGTGGGCGACCTGACCTACGGAGAAGTCTCGGGCCGG
GAGGACCGGCCGTTCAGAATGATGCTGCACGCTTTCTACCTGCGCATCCCCACGGACACCGAGTGTGTGG
AGGTCTGCACGCCTGACCCCTTCCTGCCCTCCCTGGATGCCTGCTGGAGCCCCCACACACTGCTGCAGTC
GCTGGACCAGCTCGTGCAGGCCTTACGGGCCACCCCCGACCCTGACCCCGAGGATAGGGGCCCCAGGCCA
GGCAGCCCCTCCGCACTCCTGCCTGGGCCCGGCCGGCCTCCTCCACCCCCAACCAAGCCCCCTGAGACTG
AGGCACAGCGGGGCCCCTGCCTGCAGTGGCTGTCGGAGTGGACGCTGGAACCGGACAGCTGA

Translation (183 aa):
MCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGR
EDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRP
GSPSALLPGPGRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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