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Report for CCDS15807.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15807.3 Public Mus musculus 2 Egfl7 23 108 98 CCDS HistoryNCBI Gene:353156Re-query CCDS DB by CCDS ID:15807.3Re-query CCDS DB by GeneID:353156See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15807.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 3 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15807.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102907.12 ENSMUSP00000099971.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102907.12Link to Ensembl Protein Viewer:ENSMUSP00000099971.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000102907Re-query CCDS DB by Protein ID:ENSMUSP00000099971
Original member Current member EBI ENSMUST00000150404.9 ENSMUSP00000115482.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150404.9Link to Ensembl Protein Viewer:ENSMUSP00000115482.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000150404Re-query CCDS DB by Protein ID:ENSMUSP00000115482
Original member Current member EBI ENSMUST00000166920.9 ENSMUSP00000128741.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166920.9Link to Ensembl Protein Viewer:ENSMUSP00000128741.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000166920Re-query CCDS DB by Protein ID:ENSMUSP00000128741
Original member Current member EBI ENSMUST00000239075.1 ENSMUSP00000159032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239075.1Link to Ensembl Protein Viewer:ENSMUSP00000159032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239075Re-query CCDS DB by Protein ID:ENSMUSP00000159032
Original member Current member NCBI NM_001164564.2 NP_001158036.2 Accepted alive Link to Nucleotide Sequence:NM_001164564.2Link to Protein Sequence:NP_001158036.2Re-query CCDS DB by Nucleotide ID:NM_001164564Re-query CCDS DB by Protein ID:NP_001158036Link to BLAST:NP_001158036.2
Original member Current member NCBI NM_178444.5 NP_848538.4 Accepted alive Link to Nucleotide Sequence:NM_178444.5Link to Protein Sequence:NP_848538.4Re-query CCDS DB by Nucleotide ID:NM_178444Re-query CCDS DB by Protein ID:NP_848538Link to BLAST:NP_848538.4
Original member Current member NCBI NM_198724.3 NP_942017.3 Accepted alive Link to Nucleotide Sequence:NM_198724.3Link to Protein Sequence:NP_942017.3Re-query CCDS DB by Nucleotide ID:NM_198724Re-query CCDS DB by Protein ID:NP_942017Link to BLAST:NP_942017.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158036.2 275 Q9QXT5-1 275 100% 0 0
NP_848538.4 275 Q9QXT5-1 275 100% 0 0
NP_942017.3 275 Q9QXT5-1 275 100% 0 0

Chromosomal Locations for CCDS 15807.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26589087 26589169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26589330 26589446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26590380 26590495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26590657 26590752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26590899 26591063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26591664 26591728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26592118 26592280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26592418 26592440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGTGGGGCTCCGGAGAACTGCTTGTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATG
TCTACAGACCCAGCCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGTTCCATCTCGGAGACCTTTGTGCA
GCGTGTATACCAGCCTTACCTCACCACTTGCGACGGACACAGAGCCTGCAGCACCTACCGAACCATCTAC
CGGACTGCCTATCGCCGTAGCCCTGGGGTGACTCCCGCAAGGCCTCGCTATGCTTGCTGCCCTGGTTGGA
AGAGGACCAGTGGGCTCCCTGGGGCTTGTGGAGCAGCAATATGCCAGCCTCCATGTGGGAATGGAGGGAG
TTGCATCCGCCCAGGACACTGCCGCTGCCCTGTGGGATGGCAGGGAGATACTTGCCAGACAGATGTTGAT
GAATGCAGTACAGGAGAGGCCAGTTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGG
GATGGGAGGGACAAAGCCCATCTGCAGATGGGACGCGCTGCCTGTCTAAGGAGGGGCCCTCCCCGGTGGC
CCCAAACCCCACAGCAGGAGTGGACAGCATGGCGAGAGAGGAGGTGTACAGGCTGCAGGCTCGGGTTGAT
GTGCTAGAACAGAAACTGCAGTTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCACAGAGCATG
GGCTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGAGTGA
GCAGGTGTCCTTCTTGGAGGAACATCTGGGGTCCTGCTCCTGCAAAAAAGATCTGTGA

Translation (275 aa):
MWGSGELLVAWFLVLAADGTTEHVYRPSRRVCTVGISGGSISETFVQRVYQPYLTTCDGHRACSTYRTIY
RTAYRRSPGVTPARPRYACCPGWKRTSGLPGACGAAICQPPCGNGGSCIRPGHCRCPVGWQGDTCQTDVD
ECSTGEASCPQRCVNTVGSYWCQGWEGQSPSADGTRCLSKEGPSPVAPNPTAGVDSMAREEVYRLQARVD
VLEQKLQLVLAPLHSLASRSTEHGLQDPGSLLAHSFQQLDRIDSLSEQVSFLEEHLGSCSCKKDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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