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Report for CCDS37889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37889.1 Public Mus musculus 19 Klc2 23 108 98 CCDS HistoryNCBI Gene:16594Re-query CCDS DB by CCDS ID:37889.1Re-query CCDS DB by GeneID:16594See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116563.7 ENSMUSP00000112262.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116563.7Link to Ensembl Protein Viewer:ENSMUSP00000112262.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116563Re-query CCDS DB by Protein ID:ENSMUSP00000112262
Original member Current member NCBI NM_001369360.1 NP_001356289.1 Accepted alive Link to Nucleotide Sequence:NM_001369360.1Link to Protein Sequence:NP_001356289.1Re-query CCDS DB by Nucleotide ID:NM_001369360Re-query CCDS DB by Protein ID:NP_001356289Link to BLAST:NP_001356289.1
Original member Current member NCBI NM_008451.3 NP_032477.2 Accepted alive Link to Nucleotide Sequence:NM_008451.3Link to Protein Sequence:NP_032477.2Re-query CCDS DB by Nucleotide ID:NM_008451Re-query CCDS DB by Protein ID:NP_032477Link to BLAST:NP_032477.2

Chromosomal Locations for CCDS 37889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5108605 5108688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5109103 5109160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5109301 5109425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5109493 5109642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5109733 5109841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5110197 5110264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5110367 5110416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5111138 5111237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5111365 5111538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5111619 5111720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5111826 5111913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5112718 5112940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5113781 5113850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5113941 5114171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5117194 5117421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGCCACGATGGTGCTTCCTCGAGAGGAGAAGCTGAGTCAGGACGAGATAGTGCTGGGCACCAAGGCGG
TGATCCAGGGTTTAGAGACCCTGAGAGGGGAGCATCGTGCCCTGCTAGCTCCCCTAGCTTCTCATGAAGC
AGGCGAGGCCGAGCCGGGCTCACAGGAGCGCTGCCTCCTCCTGCGCCGCTCCCTGGAGGCCATCGAGCTG
GGGCTTGGGGAGGCTCAGGTGATCCTGGCATTATCAAGCCATCTGGGGGCTGTGGAGTCAGAGAAGCAGA
AGCTGCGGGCTCAGGTGCGGCGCCTGGTACAAGAGAACCAGTGGTTGCGTGAGGAGCTGGCAGGGACACA
GCAGAAGCTGCAGCGCAGTGAACAGGCGGTGGCTCAGCTGGAGGAAGAGAAGCAGCACCTGCTATTCATG
AGTCAGATCCGAAAGCTGGATGAGGATGCTTCCCCAAATGAGGAGAAGGGTGATGTCCCCAAAGACTCCC
TGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAGCCCCCAGCCCTGGAGGAGGAGATGTAGCTGC
ACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCA
CAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCC
ATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCGGGACCAGAATAAGTACAA
GGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT
GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCAC
TGTGCAAGAGAGCACTGGAGATCCGGGAGAAGGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCT
CAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCC
CTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTGGCTT
CCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCA
CGAGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAG
AGCAAGGATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTG
ACAGTCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGC
CGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATCCTGCCAGCCAGACCAAG
GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGC
CTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGGGACGGCAGCGGCTCTCT
GCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG
CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAGGATGAAGAGGGCCAGCTCTCTTAACTTCCTTA
ACAAGAGTGTGGAAGAGCCAGTCCAGCCTGGAGGCACGGGTCTTTCTGACAGCCGCACTTTGAGCTCCAG
CTCCATGGACCTCTCTCGAAGAAGCTCCCTGGTGGGCTAA

Translation (619 aa):
MATMVLPREEKLSQDEIVLGTKAVIQGLETLRGEHRALLAPLASHEAGEAEPGSQERCLLLRRSLEAIEL
GLGEAQVILALSSHLGAVESEKQKLRAQVRRLVQENQWLREELAGTQQKLQRSEQAVAQLEEEKQHLLFM
SQIRKLDEDASPNEEKGDVPKDSLDDLFPNEDEQSPAPSPGGGDVAAQHGGYEIPARLRTLHNLVIQYAS
QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHPA
VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRA
LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGENKPIWMHAEEREE
SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRSRKQGLDPASQTK
VVELLKDGSGGRGHRRGSRDVAGPQSESDLEESGPAAEWSGDGSGSLRRSGSFGKLRDALRRSSEMLVRK
LQGGGPQEPPNSRMKRASSLNFLNKSVEEPVQPGGTGLSDSRTLSSSSMDLSRRSSLVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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