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Report for CCDS51826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51826.1 Public Mus musculus 6 Spr 23 108 98 CCDS HistoryNCBI Gene:20751Re-query CCDS DB by CCDS ID:51826.1Re-query CCDS DB by GeneID:20751See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045986.7 ENSMUSP00000048111.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045986.7Link to Ensembl Protein Viewer:ENSMUSP00000048111.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045986Re-query CCDS DB by Protein ID:ENSMUSP00000048111
Original member Current member EBI ENSMUST00000204757.2 ENSMUSP00000145412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204757.2Link to Ensembl Protein Viewer:ENSMUSP00000145412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204757Re-query CCDS DB by Protein ID:ENSMUSP00000145412
Original member Current member NCBI NM_011467.2 NP_035597.2 Accepted alive Link to Nucleotide Sequence:NM_011467.2Link to Protein Sequence:NP_035597.2Re-query CCDS DB by Nucleotide ID:NM_011467Re-query CCDS DB by Protein ID:NP_035597Link to BLAST:NP_035597.2

Chromosomal Locations for CCDS 51826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85134098 85134288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85136823 85137113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85137439 85137745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGAGGCAGGCGGGCTGGGCTGCGCTGTGTGCGTGTTGACCGGGGCCTCCCGGGGCTTTGGTCGCGCCC
TGGCCCCGCAGCTGGCCCGGTTGCTGTCTCCCGGTTCCGTGATGCTCGTAAGCGCACGCAGTGAGTCGAT
GCTGCGGCAACTGAAGGAGGAGCTGGGCGCTCAGCAGCCTGACCTGAAAGTGGTGCTGGCAGCCGCCGAT
CTGGGCACCGAGGCTGGCGTGCAGCGGTTGCTGAGCGCAGTACGCGAGCTCCCGAGGCCCGAGGGGCTGC
AGCGCCTGCTGCTCATCAACAACGCAGCCACTCTTGGGGATGTTTCCAAAGGCTTCCTCAACGTGAATGA
CCTAGCTGAGGTGAACAACTACTGGGCTCTGAACCTGACCTCCATGCTCTGTTTGACTTCCGGCACCTTG
AATGCCTTCCAGGATAGCCCTGGCCTGAGCAAGACTGTGGTTAACATCTCATCTCTGTGTGCCCTGCAGC
CCTACAAAGGCTGGGGTCTGTACTGTGCGGGGAAGGCTGCCCGAGACATGCTCTACCAGGTCCTGGCTGC
TGAGGAACCGAGTGTGCGGGTGCTGAGCTATGCTCCAGGTCCCCTGGACAATGACATGCAGCAGTTGGCT
CGGGAAACCTCCAAGGACCCAGAGTTAAGGAGCAAACTGCAGAAGTTGAAGTCGGATGGGGCGCTGGTGG
ACTGTGGGACTTCAGCCCAGAAACTGCTGGGCTTGCTGCAAAAGGACACCTTCCAGTCTGGAGCCCATGT
GGACTTCTATGACTGTTAA

Translation (262 aa):
MEAGGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD
LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTL
NAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLA
RETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQSGAHVDFYDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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