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Report for CCDS50905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50905.1 Public Mus musculus 3 Cog6 23 108 98 CCDS HistoryNCBI Gene:67542Re-query CCDS DB by CCDS ID:50905.1Re-query CCDS DB by GeneID:67542See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036665.9 ENSMUSP00000048603.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036665.9Link to Ensembl Protein Viewer:ENSMUSP00000048603.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036665Re-query CCDS DB by Protein ID:ENSMUSP00000048603
Original member Current member NCBI NM_026225.3 NP_080501.2 Accepted alive Link to Nucleotide Sequence:NM_026225.3Link to Protein Sequence:NP_080501.2Re-query CCDS DB by Nucleotide ID:NM_026225Re-query CCDS DB by Protein ID:NP_080501Link to BLAST:NP_080501.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080501.2 657 Q8R3I3 657 99.5434% 0 3

Chromosomal Locations for CCDS 50905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52983044 52983191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52986401 52986480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52989110 52989163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52989959 52990066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52992755 52992922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52993440 52993571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52996008 52996125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52998257 52998348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53000481 53000545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53002246 53002337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53002413 53002541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53007246 53007339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53009053 53009123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53009473 53009555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53010576 53010687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53012906 53012964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53013815 53013886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53015469 53015612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53017046 53017198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGCTGACGCCAGCGGGGAGGTGGCTGCGGTCCCCGCCTCCGGGGCCGCCAATGGCTTCAGTAATGGGG
CAGGTGCGACCCCCGCGCAGCCCAACAATCCGCTGTCGCGTAAGCTGCACAAGATCCTGGAGACACGGCT
AGAAAATGACAAGGAGATGTTGGAAGCTCTCAAGGCCCTTTCAGCCTTTTTTGTTGAAAATAGTTTGCGG
ACTCGAAGAAATTTACGTGGTGATATTGAACGCAGAAGCTTAGCCATCAATGAGGAGTTTGTAAACATCT
TCAAAGACGTGAAGGAGGAGCTTGAAAGCATCAATGAAGATGTACAGGCCATGAGCAGCTGTTGTCAGGA
TATGACAAGTCGCTTACAGGCAGCAAAAGAACAGACTCAAGATTTAATAGTAAAGACCACTAAGCTGCAA
GCGGAAAACCAAAGACTAGAGATTAGAGCACAGGTTGTGGATGCCTTTTTGGCCAAGTTCCAGCTGACTT
CGGATGAAATGAGTCTCCTCCGCGGTACAAGAGGAGGCCCCGTTACTGAGGACTTTTTCAAGGCATTGGG
AAGAGTGAAACAGATTCATAATGACGTCAAGGTTCTTTTGCGAACCAACCAGCAGACGGCAGGTTTGGAG
ATTATGGAACAGATGGCCTTGCTTCAAGAAACTGCTTATGAAAGACTTTACCGGTGGGCTCAAAGCGAGT
GCAGAGCACTGACTCAAGAGTCCTGTGATGTGTCTGCGGTGTTATCCCAGGCCATGGAAGCCCTGCAGGA
CAGGCCTGTCTTATACAAGTATACCTTAGATGAATTTGGAACGGCCCGACGAAGCACTGTTGTTCGTGGG
TTTATTGATGCTCTTACAAGAGGAGGGCCAGGAGGTACACCTAGGCCCATTGAAATGCACTCCCATGACC
CGCTGAGGTATGTGGGAGACATGCTGGCATGGCTCCATCAAGCTACTGCCTCTGAGAAGGAACATCTGGA
AGCTCTCTTAAAGCATGTAACTGCTCAGGGTGTTAAAGAAAATATCCAAGAAGTCGTTGGGCATATCACC
GAGGGTGTGTGTCGGCCTCTAAAGGTTCGAATTGAACAAGTAATACTTGCTGAACCTGGGGCAGTGTTGT
TATATAAAATTTCTAACCTCCTCAAGTTTTACCACCACACCATCAGTGGCATCGTTGGAAATAGTGCAGC
TACTCTACTGACAACAATTGAGGAAATGCACCTGCTAAGCAAAAAAATCTTCTTCACTAGCTTGAGTCTC
CATGCGAATAAACTGATGGACAAGGTTGAGCTCCCACCACCTGACCTCGGACCCAGCTCTGCCCTGAGTC
AGACCCTCACTTTGCTGCGGGATATTCTGGCGTCGCATGATTCTTCAGTCATCCCCTTGGATGCTCGGCA
GGCTGACTTTGTGCAGGTTTTGTCCTGTGCCCTGGATCCTCTCCTCCAGATGTGTACAGTGTCAGCCAGC
AATTTAGGCACAGCTGACATGGCCACGTTCATGGTCAACTCACTGTACATGATGAAGACAACCCTGGCTC
TGTTCGAATTCACAGACAGGCGCCTAGAAATGCTTCAGTTTCAGATTGAAGCCCATCTGGACACTCTTAT
CAATGAGCAAGCCTCTTATGTTTTAACTAGAGTTGGCTTGAGCTACATCTACAACACTATACAGCAACAT
AGACCTGATCAGGGTTCTTTAGCCAATATGCCCAACCTGGATGCTGTGGCGCTGAAGGCTGCAATGGCTC
AGTTTGACCGCTACCTCTCAGCCCCAGACCACCTCCTGATGCCACAGCTGAATTCCCTTCTCAGTGCCAC
AGTGAAGGAGCAGATTATAAAGCAGTCTACAGAGCTCGTCTGCAGAGCCTACGCGGAAGTGCATGCAGCC
GTGATGAATCCAGACAACGCATACAAAGATCCAGAGAGCATCCTTCATAGGTCACCTGAGCAGGTGAAGA
CACTGCTCTCTTGA

Translation (657 aa):
MADASGEVAAVPASGAANGFSNGAGATPAQPNNPLSRKLHKILETRLENDKEMLEALKALSAFFVENSLR
TRRNLRGDIERRSLAINEEFVNIFKDVKEELESINEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQ
AENQRLEIRAQVVDAFLAKFQLTSDEMSLLRGTRGGPVTEDFFKALGRVKQIHNDVKVLLRTNQQTAGLE
IMEQMALLQETAYERLYRWAQSECRALTQESCDVSAVLSQAMEALQDRPVLYKYTLDEFGTARRSTVVRG
FIDALTRGGPGGTPRPIEMHSHDPLRYVGDMLAWLHQATASEKEHLEALLKHVTAQGVKENIQEVVGHIT
EGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIVGNSAATLLTTIEEMHLLSKKIFFTSLSL
HANKLMDKVELPPPDLGPSSALSQTLTLLRDILASHDSSVIPLDARQADFVQVLSCALDPLLQMCTVSAS
NLGTADMATFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRVGLSYIYNTIQQH
RPDQGSLANMPNLDAVALKAAMAQFDRYLSAPDHLLMPQLNSLLSATVKEQIIKQSTELVCRAYAEVHAA
VMNPDNAYKDPESILHRSPEQVKTLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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