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Report for CCDS25403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25403.1 Public Mus musculus 11 Krt33a 23 108 98 CCDS HistoryNCBI Gene:71888Re-query CCDS DB by CCDS ID:25403.1Re-query CCDS DB by GeneID:71888See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018399.2 ENSMUSP00000018399.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018399.2Link to Ensembl Protein Viewer:ENSMUSP00000018399.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018399Re-query CCDS DB by Protein ID:ENSMUSP00000018399
Original member Current member NCBI NM_027983.3 NP_082259.2 Accepted alive Link to Nucleotide Sequence:NM_027983.3Link to Protein Sequence:NP_082259.2Re-query CCDS DB by Nucleotide ID:NM_027983Re-query CCDS DB by Protein ID:NP_082259Link to BLAST:NP_082259.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082259.2 404 Q8K0Y2 404 100% 0 0

Chromosomal Locations for CCDS 25403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100011598 100011715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100011900 100012120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100012339 100012464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100012555 100012716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100014091 100014247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100014751 100014833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100015800 100016147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGCCATACAACTGCTGCCTGCCCGCCATGAGCTGCCGCACCAGCTGCTCTTCCAGGCCCTGCGTGCCCC
CCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAATGTGGGCAACTGCAATTGGTT
CTGTGAGGGCTCCTTCAATGGCAATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTAT
ATGGAGAAGGTGAGGCAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAGGATCCAGGAGAGGAACCAGC
AGCAGGACCCCCTGGTGTGTCCTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGAT
CTTGTGTGGCAAATCTGAGAACGCCAGGCTGGTCGTGCAGATCGACAATGCCAAGCTGGCTTCTGATGAC
TTCAGGACCAAGTACGAGACAGAGCTTAGTCTGCGGCAGCTGGTAGAGGCTGACATCAACAGCCTGCGCA
GGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGGCGCAGGTGGAGTCCCTGAAGGAGGAGCT
GCTCTGCCTCAAGCAGAATCACGAGCAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAAC
GTGGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTACTCAACGAGACCAGGTGTCAGTACGAGG
CCCTGGTGGAAACCAACCGCCGGGAAGTGGAGGAATGGTACACCACACAGACAGAGGAGTTGAACAAGCA
GGTGGTGTCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCCGAGATCATCGAGCTGAGACGCACAGTCAAT
GCCCTGGAGATCGAGCTGCAGGCCCAGCATGAACTGAGAAACTCTCTGGAGAACACCCTGACAGAGAGTG
AGGCTCGCTACAGCTCCCAGCTGTCCCAGGTGCAGTGCCTGATCACCAATGTGGAGTCCCAGCTTGGTGA
GATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAAGTGCTGCTGGACATTCGGTCTCGTCTGGAG
TGTGAGATCAACACGTACAGGGGCCTGCTGGAGAGCGAGGACTGCAAGCTCCCTTGCAATCCCTGTGCCA
CAACCAATGCTTGTGATAAGCCCATTGGGCCCTGTGTCCCTAACCCTTGTGTCACACGACCTCGATGTGG
ACCTTGCAACACTTTTGTGCGTTAG

Translation (404 aa):
MPYNCCLPAMSCRTSCSSRPCVPPSCHGCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASY
MEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCGKSENARLVVQIDNAKLASDD
FRTKYETELSLRQLVEADINSLRRILDELTLCKSDLEAQVESLKEELLCLKQNHEQEVNTLRCQLGDRLN
VEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWYTTQTEELNKQVVSSSEQLQSCQAEIIELRRTVN
ALEIELQAQHELRNSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDIRSRLE
CEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVPNPCVTRPRCGPCNTFVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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