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Report for CCDS25371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25371.1 Public Mus musculus 11 Igfbp4 23 108 98 CCDS HistoryNCBI Gene:16010Re-query CCDS DB by CCDS ID:25371.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017637.12 ENSMUSP00000017637.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017637.12Link to Ensembl Protein Viewer:ENSMUSP00000017637.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000017637Re-query CCDS DB by Protein ID:ENSMUSP00000017637
Original member Current member NCBI NM_010517.4 NP_034647.1 Accepted alive Link to Nucleotide Sequence:NM_010517.4Link to Protein Sequence:NP_034647.1Re-query CCDS DB by Nucleotide ID:NM_010517Re-query CCDS DB by Protein ID:NP_034647Link to BLAST:NP_034647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034647.1 254 P47879 254 100% 0 0

Chromosomal Locations for CCDS 25371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99041497 99041845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99048226 99048371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99049094 99049228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99051445 99051579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCTGCCCTTCGGCCTCGTGGCCGCCCTGCTGCTGGCCGCAGGGCCTCGGCCGAGCCTGGGCGACGAAG
CCATCCACTGCCCCCCTTGCTCCGAGGAGAAGCTGGCGCGCTGCCGCCCCCCCGTGGGTTGCGAGGAGTT
GGTGCGGGAGCCAGGCTGCGGTTGTTGCGCCACTTGCGCCCTGGGCTTGGGGATGCCCTGCGGGGTGTAC
ACCCCACGCTGTGGCTCAGGCATGCGCTGCTACCCTCCCCGGGGGGTGGAGAAGCCCCTGCGTACATTGA
TGCACGGGCAAGGCGTGTGCACGGAGCTGTCGGAAATCGAAGCCATCCAGGAAAGCCTGCAGACCTCTGA
CAAGGATGAGAGCGAACATCCCAACAACAGCTTCAACCCCTGCAGTGCCCATGATCACAGGTGCCTGCAG
AAGCATATGGCCAAAATTAGAGATCGGAGCAAGATGAAGATCGTGGGGACACCTCGGGAGGAACCCCGTC
CTGTGCCCCAGGGTTCCTGCCAGAGCGAGCTGCACCGGGCCCTGGAGCGGCTGGCCGCCTCACAGAGCCG
TACCCACGAAGACCTCTTCATCATCCCCATTCCAAACTGTGACCGCAACGGCAACTTCCACCCCAAACAG
TGTCACCCCGCCCTGGACGGACAGCGTGGCAAGTGCTGGTGTGTGGATCGGAAGACAGGGGTGAAGCTTC
CTGGGGGTTTGGAACCCAAGGGGGAGCTGGACTGCCACCAGCTGGCTGACAGCTTCCAAGAGTGA

Translation (254 aa):
MLPFGLVAALLLAAGPRPSLGDEAIHCPPCSEEKLARCRPPVGCEELVREPGCGCCATCALGLGMPCGVY
TPRCGSGMRCYPPRGVEKPLRTLMHGQGVCTELSEIEAIQESLQTSDKDESEHPNNSFNPCSAHDHRCLQ
KHMAKIRDRSKMKIVGTPREEPRPVPQGSCQSELHRALERLAASQSRTHEDLFIIPIPNCDRNGNFHPKQ
CHPALDGQRGKCWCVDRKTGVKLPGGLEPKGELDCHQLADSFQE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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