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Report for CCDS89430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89430.1 Public Mus musculus 2 Etl4 23 108 98 CCDS HistoryNCBI Gene:208618Re-query CCDS DB by CCDS ID:89430.1Re-query CCDS DB by GeneID:208618See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066509.9 ENSMUSP00000066170.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066509.9Link to Ensembl Protein Viewer:ENSMUSP00000066170.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066509Re-query CCDS DB by Protein ID:ENSMUSP00000066170
Original member Current member NCBI NM_001369134.1 NP_001356063.1 Accepted alive Link to Nucleotide Sequence:NM_001369134.1Link to Protein Sequence:NP_001356063.1Re-query CCDS DB by Nucleotide ID:NM_001369134Re-query CCDS DB by Protein ID:NP_001356063Link to BLAST:NP_001356063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356063.1 1946 A2AQ25-1 1946 100% 0 0

Chromosomal Locations for CCDS 89430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20519858 20519927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20529959 20530242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20661898 20662096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20709405 20709603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20713355 20713448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20743459 20744291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20759547 20759651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20760215 20760264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20766445 20766611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20778026 20778201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20780942 20781072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20781798 20781945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20785044 20785500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20788428 20788611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20797877 20798031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20798616 20798783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20801542 20801661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20805585 20805662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20805775 20807373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20807902 20808024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20808710 20809210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5841 nt):
ATGGAAGAAAGCGAAGGCCAGAAATGTGAGCCGAACCTGCCTCCCTCCGGAGACAGCAGACAGATGCCCC
AACAAGGGAGAAGCAATCTTCATGTAACATCTCAGGAAGATGCAGCATGCCGCAGGCCCAGGGAACGCCT
TTCTAATGGAAACGCCAGGGCTCAGGTTTCCAAGCCTGCCCGAAATATCCCAAGGAGACACACTCTAGGT
GGGCCCCGAAGTTCCAAAGAGATCCTGGGAATGCAGCCATCTGAGATGGACAGGAAGAGAGAGGCGTTCC
TAGAACATCTAAAGCAGAAGTACCCCCACCATGCCACAGCCATCATGGGCCACCAGGAGAGGCTGAGGGA
CCAGACAAAAAGTCCCAAGCTGTCCCACAGTCCTCAACCTCCCAATTTGGGGGATCCGGTTGAACATTTA
TCAGAGACATCTGGTGACTCTTTGGAAGCCATGTCCGAGGGAGAAGTACCGAGTCCTTTCGCCAGAGGCA
GTCGTACTCGCGCGAGCCTTCCCGTGGTGAGGTCGGCCAATCAAACAAAGGAAAGATCCCTGGGTGTCCT
CTACCTCCAGTATGGAGACGAAACCAAACAGCTGCGGATGCCGAATGAAGTCACAAGCACAGACACAATC
CGAGCTCTCTTCGTCAGTGCCTTTCCCCAGCAGCTCACCATGAAGATGCTGGAGTCGCCCAGTGTTGCCA
TCTACATCAAGGATGACAGCAGAAATGTCTACTATGAGTTAAATGATGTGAGGAATATCCAAGACAGATC
CCTTCTCAAAGTATACAACAAGGATCCTTCACATGCATTTAACCACATGACGAAAGCCGTGAACGGAGAC
ATGAGGATGCAGAGAGAAATTGTTTATGCAAGAGGAGATGGGCTTGTTGCCCCCCGACCAGGATCTGTGG
CTCACCCACCTCATGTAATTCCAAACTCCCCACCATCAACTCCGGTGCCCCATTCCTTACCTCCCTCTCC
ATCCAGAATTCCTTACGGGGGCAGCCGTCCAATGGCTATTCCTGGCAATGCCACCATCCCCAGGGACAGA
CTCTCGAGCCTGCCAGTATCCAGATCCATCTCCCCAAGCCCCAGCGCCATTTTGGAAAGAAGAGATGTCA
AACCGGATGAAGACATGAGCAGCAAAAACCTGGTTATGTTCAGAAATGAGGGTTTCTATGCCGACCCTTA
CCTCTATCATGAAGGACGAATGAGCATAGCCTCATCCCATGGCGGCCACCCTTTGGATGTCCCAGATCAT
GTCATTGCGTATCACCGCACAGCGATCCGGTCAGCGAGTGCTTACTGTAGCCCTTCCTTGCAAGCAGAAA
TGCATATGGAGCAGTCGTTATACAGACAAAAGTCAAGGAAATACCCTGATAGCCATTTGCCTACCTTGGG
CTCCAAAACGCCCCCAGCCTCTCCACACCGTGTGGGTGACTTAAGAATGATAGACCTGCACCCGCATCTT
AACACACATGGGCCCCCTCACACTCTGCAGCCAGACCGGGCCTCCCCCAGTCGCCAGTCCTTTAAAAAGG
AACCCGGCACCCTGGTGTACATCGAAAAGCCACGAAACACTTCAGGATTATCCAGCCTTGTAGACCTGGG
GCCTCCTCTAGTTGAGAAGCAAGGTTTTGCTTACAGCACCACTACAATCCCCAAAGACAGAGAAACCAGA
GAGAGGATGCAAGCCATGGAGAAGCAGATTGCCAGTCTAACTGGCCTTGTTCAGTCTGCGCTTTTTAAAG
GGCCCATTACAAGTAGTAGCAAAGAGGCGTCTAGTGAGAAAATGGTGAAAGCCACAGCCAACAGGAACCA
AGCAGATGGTGCAGGAACGGCCCATGTTTCTGCAGGGAAGGTTCTGGGCTCTGTGGAGTTCTCCCTGCCG
CCCAGCCAACCCCTGCCTGCCGGAACCTCGCCCATCCACACTAGCCTGCTTGACATGAGGAGGAACGTGG
CTGAACTCAGGCTCCAACTCCAGCAGATGAGGCAGCTCCAGCTGCAGAACCAGGAGATTCTGAGGGCGAT
GATGAAGAAGGCTGAGCTGGAAATCAGTAACAAAGTGAAGGAGACCATGAAGAGACTAGAGGATCCGGTA
CAGCGTCAGCGCACCCTGGTGGAGCAAGAGAGACAGAAGTACCTCCACGAAGAAGAGCGGATTGTCAAAA
AGTTATGTGAGCTGGAGGACTTTGTTGAGGACTTGAAGAAGGACTCTTCCTCCACTGGCAGAGTGGTGAC
CCTGAAAGATGTGGAAGATGGGGCTTTCCTCCTGCGACAAGTGGGAGAAGCTGTGGCCACTCTCAAAGGA
GAATTTCCAACTTTGCAAAATAAGATGCGTGCTGTCCTGCGCATAGAAGTTGAGGCAGTAAGGTTCCTGA
AGGAAGAGCCACACAAGCTGGACAGTCTCCTGAAGCGTGTGAGGAGCATGACAGATGTCTTGACGATGTT
GCGGAGGCATGTCACTGATGGGCTCCTGAAAGGCACCGATGCATCCCAGGCTGCACAGTATGTTGCCATG
GAGAAGGCCACAGCTGCAGAGGTCCTGAAGCATCAGGAAGAGACAGCCCATGCCCCTGGGCAACCCCTCC
ACTGTAGCACTGGAAGCCCTGGCGATGTGAAGTCAGAAGTGGTGCCCCTATCCACCATGACAGTTCACCA
TGTACAGAGCTCGCCTGTGGTCATGCAACCTTCCCAGCACTCCTCAGCCTTGATGAACCCAGCCCAGAAC
TTGCCTGGAGGAACCAGACCTCACACAGCCAGCCCTCCAGCAATCACACAGGAAGTAACCTCTGCCCAGT
CAGCTCCAGGCCCCCAGTCCCCTCAGACCCCAGTGAATGGTTCCTCCATGCAGAGCTTGTTCATTGAGGA
AATTCACAGTGTGAGTGCCAAGAACAGGGCAGTGTCCATTGAGAAGGCAGAAAAGAAATGGGAAGAAAAA
AGGCAAAATCTGGAACACTATAACGGAAAGGAGTTCGAGAAGCTCCTGGAGGAAGCTCAGGCCAACATCA
TGAAGTCAATTCCAAACCTGGAGATGCCCCCAGCTTCCAGCCCAGTGTCAAAGGGAGATGCGGCAGGGGA
TAAGCTGGAGCTGTCAGAAGATTCTCCAAATTCAGAGCAGGAATTGGACAAGATAGGGGGAAAGTCACCC
CCTCCTCCACCCCCACCCCCTCGGAGAAGCTACCTTCCTGGATCAGGACTTACCACCACGAGATCAGGCG
ATGTGGTCTACACTGGCAGGAGCATGTCTAAGGTGAGCAGTGAAGACCCTGGGCCAACACCACAGACTAG
AGCCACAAAATGTCCCCCGGAGGAACCTGCCTCAGCCTGGGCCCCATCCCCACCACCAGTCCCTGCCCCT
TCCTCCAAGGAGGAGGAGGAAGAAGAAGAAGAAGGAGACAAAATCATGGCAGAACTCCAGGCATTCCAGA
AGTGTTCCTTTATGGATGTAAATCCAAACAGTCATGCTGAGCAGTCCCGAGCTAACAGCCACCTTAAAGA
CACTAGGGCAGGCGCCACAGCCCCACCCAAGGAGAAGAAGAATTTGGAATTTTACCACGAAGATGTACGA
AAATCTGATGTTGAATGTGAAAATGGCCCCCAAGTGGAATCTCAAAAGGTTACTGCAGGGGCTCTGAGAC
CTAGTGGCCCCCCCAAATGGGAAAGAGTCATGGTGGATAGTATATCTGACACCTCAAGAACATCAGAATG
TAGAGCTGACACCTTCACAGAGGAAAATGCCACACCCAATAAGAGCTTATTCAGAGACAGTAGAAATTAT
TCCCAGAAAAATGTGCCTAAGGTCAGTTTTTCTTCCTCTGGCCTGAACTCATTAGAAGGTGAAATCAACA
AAGGGCCTAATGTCTCGGGACTACAGTGTGCTATTCCTGACTTGGAAAATCAGAAGTTAAATTTTGGAAA
GACAAAAGAGATAGGCCAACAGGGACAAGAAAATGCAGACAAGAGTCACATTCCTCTCCCAACTCGATCA
GCAGAATTCAGTATTCATGATGTCAAAACACAAGATCAAGATGTTCCCGTGACAGGTTATGGCCAAGTTG
TCCTGAGATCGAAGGTGGGTAGGCACGCTAATATGAACATGAATGAGGATGGAGAATCAACTCCAAGTTC
TCCCAGTGAGGAACACACAGCCACTGATAACATCGCCTTTATGATCACCAAAACTGCTGTCCAGGTTCTG
TCCAGCGGGGAGGTCCATGACATAGTGAGTCAAAAAGGACAAGATGTACAGACAGTTAATATTGATGGAA
GGAAAGAGACAGCCTCTCAGCACGAAGGGACAGAAGGGGAAGAACCGGTTGTGTGCCTGGACAAGAAACC
AGTTATTATCATTTTTGATGAACCCATGGACATCCGATCTGCATATAAAAGACTCTCAACCATCTTTGAG
GAATGCGATGAGGAGCTAGAGAGAATGCTGACAGAGGAAAAGATAGAGGAAGAGGAAGAGGATGAAAACG
AAGACTCTGGAGTCCGAACCTCATCCCAAATGTCCTGTGAACAGGTCGACTCGAGAAGTGATAGGATGGG
ACAAAAGGCAGAGACACAGTCACAGCCCCATGTCCTGTCAGCAGAGTTGCTAACTCCAGGAGTGCAGGGG
GTTCGTAAAGCCGAGCAGAGAAAGCTTAGCTCAGCTGATTCTCCAGACTCAGGGAATAAGTGTGGCATGG
TTGATGACCAGTTTGAAAGTCCCAAGAAAAAGTTTAAGTTCAAATTCCCTAAAAAGCAGCTTGCTGCTCT
TACACAGGCAATTCGCACAGGCACCAAAACGGGAAAGAAAACCCTGCAGGTGGTTGTCTATGAGGAAGAG
GAAGAGGACGGTACTTTGAAACAGCACAAAGAAGCCAAGCGGTTTGAAATCACCAGGTCACAGCCTGAAG
ATGCCCTCAAAACCATGGCTAGGAGGCAAGAGCAGCTCAGCCCTGAGGGCACCCTTCCGGCATCAAGGAC
TGATGAAATTAGGAAAAGTACTTACAGAACACTGGACAGCCTGGAGCAGACCATAAAGCAACTTGAAAAT
ACAATCAGTGAAATGAGCCCCAGGGCCCTAGTTGATACCTCATGTTCTTCCAACAGAGATTGTGGTGCAA
GCTTGCCCCACATGGCCCAAGAGGTCTCTCCCCGGTCCTTGCTAGTTCTGGATGAAGTACCCCCTGCCCC
AGAGCCCCCCACATCCATATCTCCAGCTTCACGTAAGGGCTCCAGCACCACCCCACAGACAAGCCGGATG
CCAGTCCCCATGACTTCCAAGAACAGACCCGGAAGCCTGGATAAGGCCAGCAAGCAGTCCAAACTACAGG
ATCCCCGCCAATACCGTCAGGCTAATGGAAGTGCTAAGAAAGCTGGTGGGGACTGTAAGCCTACTTCCCC
CTCCTTACCTGCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGAAAAGCAGTTCTCTGCCTTCCGCT
AGTGGGGACAGCTCTAACCTCCCCAATGCACCTGCTACTAAACCATCGATTGCTTCTACCCCTCTCAGCC
CCCAAGCAGGACGGTCCGCTCACTCCGCTTCCCTCATCCCTTCTGTCTCTAATGGCTCCTTAAAGTTTCA
GAGCCCACCTCACGCAGGTAAAGGCCATCATCACCTTTCGTTCGCACTGCAGACTCAAAATGGCCGAGCT
GCCCCTACTACCTCTTCCTCCTCATCCCCTCCTTCCCCTGCCTCCCCCACCTCCCTGAATCAAGGTGCCA
GGGGCATCAGGACCATCCATACTCCTAGCCTCGCCAGCTACAAAGCACAGAATGGAAGTTCAAGCAAAGC
CACCCCATCCACAGCAAAAGAAACGTCTTAA

Translation (1946 aa):
MEESEGQKCEPNLPPSGDSRQMPQQGRSNLHVTSQEDAACRRPRERLSNGNARAQVSKPARNIPRRHTLG
GPRSSKEILGMQPSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTKSPKLSHSPQPPNLGDPVEHL
SETSGDSLEAMSEGEVPSPFARGSRTRASLPVVRSANQTKERSLGVLYLQYGDETKQLRMPNEVTSTDTI
RALFVSAFPQQLTMKMLESPSVAIYIKDDSRNVYYELNDVRNIQDRSLLKVYNKDPSHAFNHMTKAVNGD
MRMQREIVYARGDGLVAPRPGSVAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGNATIPRDR
LSSLPVSRSISPSPSAILERRDVKPDEDMSSKNLVMFRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDH
VIAYHRTAIRSASAYCSPSLQAEMHMEQSLYRQKSRKYPDSHLPTLGSKTPPASPHRVGDLRMIDLHPHL
NTHGPPHTLQPDRASPSRQSFKKEPGTLVYIEKPRNTSGLSSLVDLGPPLVEKQGFAYSTTTIPKDRETR
ERMQAMEKQIASLTGLVQSALFKGPITSSSKEASSEKMVKATANRNQADGAGTAHVSAGKVLGSVEFSLP
PSQPLPAGTSPIHTSLLDMRRNVAELRLQLQQMRQLQLQNQEILRAMMKKAELEISNKVKETMKRLEDPV
QRQRTLVEQERQKYLHEEERIVKKLCELEDFVEDLKKDSSSTGRVVTLKDVEDGAFLLRQVGEAVATLKG
EFPTLQNKMRAVLRIEVEAVRFLKEEPHKLDSLLKRVRSMTDVLTMLRRHVTDGLLKGTDASQAAQYVAM
EKATAAEVLKHQEETAHAPGQPLHCSTGSPGDVKSEVVPLSTMTVHHVQSSPVVMQPSQHSSALMNPAQN
LPGGTRPHTASPPAITQEVTSAQSAPGPQSPQTPVNGSSMQSLFIEEIHSVSAKNRAVSIEKAEKKWEEK
RQNLEHYNGKEFEKLLEEAQANIMKSIPNLEMPPASSPVSKGDAAGDKLELSEDSPNSEQELDKIGGKSP
PPPPPPPRRSYLPGSGLTTTRSGDVVYTGRSMSKVSSEDPGPTPQTRATKCPPEEPASAWAPSPPPVPAP
SSKEEEEEEEEGDKIMAELQAFQKCSFMDVNPNSHAEQSRANSHLKDTRAGATAPPKEKKNLEFYHEDVR
KSDVECENGPQVESQKVTAGALRPSGPPKWERVMVDSISDTSRTSECRADTFTEENATPNKSLFRDSRNY
SQKNVPKVSFSSSGLNSLEGEINKGPNVSGLQCAIPDLENQKLNFGKTKEIGQQGQENADKSHIPLPTRS
AEFSIHDVKTQDQDVPVTGYGQVVLRSKVGRHANMNMNEDGESTPSSPSEEHTATDNIAFMITKTAVQVL
SSGEVHDIVSQKGQDVQTVNIDGRKETASQHEGTEGEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFE
ECDEELERMLTEEKIEEEEEDENEDSGVRTSSQMSCEQVDSRSDRMGQKAETQSQPHVLSAELLTPGVQG
VRKAEQRKLSSADSPDSGNKCGMVDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEE
EEDGTLKQHKEAKRFEITRSQPEDALKTMARRQEQLSPEGTLPASRTDEIRKSTYRTLDSLEQTIKQLEN
TISEMSPRALVDTSCSSNRDCGASLPHMAQEVSPRSLLVLDEVPPAPEPPTSISPASRKGSSTTPQTSRM
PVPMTSKNRPGSLDKASKQSKLQDPRQYRQANGSAKKAGGDCKPTSPSLPASKIPALSPSSGKSSSLPSA
SGDSSNLPNAPATKPSIASTPLSPQAGRSAHSASLIPSVSNGSLKFQSPPHAGKGHHHLSFALQTQNGRA
APTTSSSSSPPSPASPTSLNQGARGIRTIHTPSLASYKAQNGSSSKATPSTAKETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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