NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51288.1 Public Mus musculus 4 Ppih 23 108 98 CCDS HistoryNCBI Gene:66101Re-query CCDS DB by CCDS ID:51288.1Re-query CCDS DB by GeneID:66101See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106317.1 ENSMUSP00000101924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106317.1Link to Ensembl Protein Viewer:ENSMUSP00000101924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106317Re-query CCDS DB by Protein ID:ENSMUSP00000101924
Original member Current member NCBI NM_001110130.1 NP_001103600.1 Accepted alive Link to Nucleotide Sequence:NM_001110130.1Link to Protein Sequence:NP_001103600.1Re-query CCDS DB by Nucleotide ID:NM_001110130Re-query CCDS DB by Protein ID:NP_001103600Link to BLAST:NP_001103600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103600.1 188 Q9D868-1 188 100% 0 0

Chromosomal Locations for CCDS 51288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119311335 119311436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119311532 119311572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119312219 119312306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119317028 119317120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119318544 119318586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119319520 119319564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119319830 119319853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119320169 119320233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119320409 119320474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGCGGTGGCAAATTCAAGTCCAGTCAATCCAGTGGTCTTCTTCGATGTCAGCATTGGCGGCCAGGAAG
TTGGTCGCATGAAAATCGAGCTCTTTGCAGACGTGGTGCCTAAGACGGCAGAGAACTTTAGGCAATTCTG
CACCGGAGAGTTCAGAAAAGATGGCGTTCCGATAGGATACAAAGGAAGCACCTTCCACAGGGTCATAAAG
GATTTCATGATTCAGGGTGGAGATTTTGTTAATGGCGATGGCACTGGAGTCGCCAGTATTTACCGGGGTC
CATTTGCGGATGAAAATTTTAAACTTAGACACTCTGCTCCAGGCCTGCTTTCCATGGCAAACAGTGGTCC
CAGTACAAATGGCTGCCAGTTCTTTATCACGTGTTCTAAGTGTGATTGGCTGGATGGAAAGCATGTAGTG
TTTGGAAAAATCATTGACGGACTTCTAGTGATGAGGAAGATCGAGTTCCAGGCTCCTTTGGGAAAGAGAG
TTCAAGCTTGGACCCATTCATTAACCTGCCCAGCACTTACTGGGATTTTGGCTCTGATCCTGATGCCCAC
TGAATAA

Translation (188 aa):
MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK
DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV
FGKIIDGLLVMRKIEFQAPLGKRVQAWTHSLTCPALTGILALILMPTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH