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Report for CCDS19620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19620.1 Public Mus musculus 5 Plbd2 23 108 98 CCDS HistoryNCBI Gene:71772Re-query CCDS DB by CCDS ID:19620.1Re-query CCDS DB by GeneID:71772See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031597.6 ENSMUSP00000031597.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031597.6Link to Ensembl Protein Viewer:ENSMUSP00000031597.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031597Re-query CCDS DB by Protein ID:ENSMUSP00000031597
Original member Current member NCBI NM_023625.4 NP_076114.2 Accepted alive Link to Nucleotide Sequence:NM_023625.4Link to Protein Sequence:NP_076114.2Re-query CCDS DB by Nucleotide ID:NM_023625Re-query CCDS DB by Protein ID:NP_076114Link to BLAST:NP_076114.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076114.2 594 Q3TCN2-1 594 100% 0 0

Chromosomal Locations for CCDS 19620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120485671 120485838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120486040 120486202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120486648 120486800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120487430 120487501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120487672 120487767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120488410 120488570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120491126 120491223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120492665 120492879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120493052 120493152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120494378 120494536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120498997 120499090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120503287 120503591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGCGGCCCCCGTGGATGGGAGCTCCGGCGGCTGGGCGGCCCGGGCGCTACGGCGGGCACTGGCGCTGA
CCTCCCTGACCACACTGGCCTTGCTGGCCTCGCTGACCGGGCTGTTGCTGAGCGGCCCGGCGGGCGCTCT
CCCTACCCTGGGGCCCGGCTGGCAGCGCCAAAATCCGGACCCGCCGGTCTCCCGCACCCGCTCGCTGCTG
CTGGACGCCGCGTCGGGCCAGCTGCGCCTGGAGGATGGCTTCCACCCCGACGCGGTGGCCTGGGCCAACC
TCACCAACGCCATCCGCGAGACCGGGTGGGCCTATCTGGACCTGAGCACAAATGGCAGGTACAATGACAG
CCTGCAGGCCTATGCAGCTGGTGTGGTGGAGGCCTCTGTGTCTGAGGAGCTCATCTACATGCACTGGATG
AACACGGTGGTCAACTACTGCGGCCCCTTCGAATACGAAGTCGGCTACTGTGAGAAGCTTAAGAACTTCC
TGGAGGCCAACCTGGAGTGGATGCAGAGGGAAATGGAGCTTAACCCGGACTCTCCGTACTGGCACCAGGT
GCGGCTGACCCTCCTGCAGCTGAAAGGCCTGGAGGACAGCTATGAAGGCCGTTTAACCTTCCCAACTGGG
AGGTTCACCATCAAACCCTTGGGGTTCCTCCTGCTGCAGATCTCTGGAGACCTGGAAGACCTAGAGCCAG
CCCTGAATAAGACCAACACCAAGCCTTCCCTGGGCTCCGGTTCATGCTCTGCCCTCATCAAGCTGCTGCC
TGGCGGGCATGACCTCCTGGTGGCGCACAACACGTGGAACTCCTACCAGAACATGTTACGCATCATCAAG
AAGTACAGGCTGCAGTTCCGGGAGGGGCCGCAAGAGGAGTACCCCCTGGTTGCTGGCAACAACTTGGTTT
TCTCGTCCTACCCGGGCACCATCTTCTCCGGAGATGACTTCTACATCCTGGGCAGTGGCCTGGTCACCCT
GGAGACCACCATTGGCAACAAGAACCCAGCCCTGTGGAAGTACGTGCAGCCCCAGGGCTGTGTGCTGGAG
TGGATACGAAATGTCGTGGCCAACCGCCTGGCCTTGGACGGGGCCACCTGGGCAGACGTCTTCAAGCGGT
TCAACAGCGGCACGTACAATAACCAGTGGATGATTGTGGACTACAAGGCATTCCTCCCCAACGGACCCAG
CCCTGGAAGCCGGGTGCTCACTATCCTAGAACAGATCCCGGGCATGGTGGTGGTGGCTGACAAGACTGCA
GAGCTCTACAAAACGACCTACTGGGCTAGCTACAACATCCCGTACTTTGAGACTGTATTCAACGCTAGTG
GGCTGCAGGCCCTGGTGGCCCAGTATGGAGATTGGTTCTCTTACACTAAGAACCCTCGAGCCAAGATCTT
CCAGAGGGACCAGTCACTGGTGGAGGACATGGACGCCATGGTCCGGCTCATGAGGTACAATGATTTCCTC
CATGACCCTCTGTCATTGTGTGAAGCCTGCAACCCAAAGCCTAATGCGGAGAATGCCATCTCTGCCCGCT
CTGACCTCAACCCCGCCAATGGCTCCTACCCATTTCAGGCCCTGCATCAGCGCGCCCATGGTGGCATTGA
TGTGAAGGTGACCAGCTTTACCCTGGCCAAGTACATGAGCATGCTGGCGGCCAGTGGCCCCACGTGGGAC
CAGTGTCCTCCGTTCCAGTGGAGCAAATCGCCATTCCACAGCATGCTGCACATGGGCCAGCCCGACCTCT
GGATGTTCTCACCCATCAGGGTGCCATGGGACTGA

Translation (594 aa):
MAAPVDGSSGGWAARALRRALALTSLTTLALLASLTGLLLSGPAGALPTLGPGWQRQNPDPPVSRTRSLL
LDAASGQLRLEDGFHPDAVAWANLTNAIRETGWAYLDLSTNGRYNDSLQAYAAGVVEASVSEELIYMHWM
NTVVNYCGPFEYEVGYCEKLKNFLEANLEWMQREMELNPDSPYWHQVRLTLLQLKGLEDSYEGRLTFPTG
RFTIKPLGFLLLQISGDLEDLEPALNKTNTKPSLGSGSCSALIKLLPGGHDLLVAHNTWNSYQNMLRIIK
KYRLQFREGPQEEYPLVAGNNLVFSSYPGTIFSGDDFYILGSGLVTLETTIGNKNPALWKYVQPQGCVLE
WIRNVVANRLALDGATWADVFKRFNSGTYNNQWMIVDYKAFLPNGPSPGSRVLTILEQIPGMVVVADKTA
ELYKTTYWASYNIPYFETVFNASGLQALVAQYGDWFSYTKNPRAKIFQRDQSLVEDMDAMVRLMRYNDFL
HDPLSLCEACNPKPNAENAISARSDLNPANGSYPFQALHQRAHGGIDVKVTSFTLAKYMSMLAASGPTWD
QCPPFQWSKSPFHSMLHMGQPDLWMFSPIRVPWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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