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Report for CCDS53034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53034.1 Public Mus musculus X Gm10487 23 108 98 CCDS HistoryNCBI Gene:100039467Re-query CCDS DB by CCDS ID:53034.1Re-query CCDS DB by GeneID:100039467See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180344.7 ENSMUSP00000136976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180344.7Link to Ensembl Protein Viewer:ENSMUSP00000136976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180344Re-query CCDS DB by Protein ID:ENSMUSP00000136976
Original member Current member EBI ENSMUST00000177566.1 ENSMUSP00000136994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177566.1Link to Ensembl Protein Viewer:ENSMUSP00000136994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177566Re-query CCDS DB by Protein ID:ENSMUSP00000136994
Original member Current member NCBI NM_001100609.1 NP_001094079.1 Accepted alive Link to Nucleotide Sequence:NM_001100609.1Link to Protein Sequence:NP_001094079.1Re-query CCDS DB by Nucleotide ID:NM_001100609Re-query CCDS DB by Protein ID:NP_001094079Link to BLAST:NP_001094079.1

Chromosomal Locations for CCDS 53034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 30820647 30820715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30821035 30821133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30823583 30823664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30831863 30831926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30832239 30832364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30835489 30835523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30836063 30836129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 30841738 30841834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGTCTATTAAGAAACTGTGGGTGATACCAAAGGATGGTTACTTATTACTTCTTGACTATGATTCAGATG
AAGAAGAAGAGCAGGCTCATTCTGAAGTAAAGAGGCCAGCATTTGGCAAACATGAGAATATGCCGCCTCA
CGTAGAAGCAGATGAAGATATAAGAGATGAACAAGACAGTATGTTGGATAAATCTGGAGAAAACGTAAGT
TTCTCAGAGGAATGGCAGCGTTTTGCACGTTCTGTAGAGACACCAATGGAAAACTGGAATTTGTTAAGTG
GTGAACAGCAAGTTAGGAATGCTTCAGAATTGGACCTTATGGAAGTACAGAATCCAGTAACTCATGATGA
TGGGAATGCAAATCCTGAAGAAGTAGTTGGAGATACACGAAAGAAGATCAACAACAAATTGTGTGAGCAG
AAGTTTGATATGGATATACAGAAATTCAATGAAGAACAAGAAAAATCAGTGAACAATTATCAAAAAGAAC
AACAAGCATTAAAACTGTCCGAATGTAGTCAGAGTCCGACCATGGAAGCAATTGAAGACATGCATGAGAA
GTCCATGGAGGGTTTGATGAACATGGAGACCAACAACTACGATATGCTTTTTGATGTAGATGGTGAAGAG
ACATTATGA

Translation (212 aa):
MSIKKLWVIPKDGYLLLLDYDSDEEEEQAHSEVKRPAFGKHENMPPHVEADEDIRDEQDSMLDKSGENVS
FSEEWQRFARSVETPMENWNLLSGEQQVRNASELDLMEVQNPVTHDDGNANPEEVVGDTRKKINNKLCEQ
KFDMDIQKFNEEQEKSVNNYQKEQQALKLSECSQSPTMEAIEDMHEKSMEGLMNMETNNYDMLFDVDGEE
TL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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