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Report for CCDS50071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50071.1 Public Mus musculus 17 Hsd17b8 23 108 98 CCDS HistoryNCBI Gene:14979Re-query CCDS DB by CCDS ID:50071.1Re-query CCDS DB by GeneID:14979See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045467.13 ENSMUSP00000038069.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045467.13Link to Ensembl Protein Viewer:ENSMUSP00000038069.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045467Re-query CCDS DB by Protein ID:ENSMUSP00000038069
Original member Current member NCBI NM_013543.2 NP_038571.2 Accepted alive Link to Nucleotide Sequence:NM_013543.2Link to Protein Sequence:NP_038571.2Re-query CCDS DB by Nucleotide ID:NM_013543Re-query CCDS DB by Protein ID:NP_038571Link to BLAST:NP_038571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038571.2 259 P50171-1 259 100% 0 0

Chromosomal Locations for CCDS 50071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34026209 34026225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34026396 34026470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34026663 34026705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34026851 34026935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34027016 34027101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34027203 34027295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34027406 34027522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34027623 34027840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34028002 34028047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCGTCTCAGCTCCGGCTCCGCTCTGCGCTGGCCCTGGTCACAGGTGCGGGTAGCGGCATCGGCCGTG
CGATCAGCGTGCGCCTAGCGGCAGAGGGCGCCGCCGTGGCCGCCTGCGACCTGGACGGGGCCGCGGCACA
GGACACGGTGCGGCTGCTGGGAAGCCCGGGGAGCGAGGACGGGGCGCCGCGCGGCAAGCACGCTGCCTTC
CAAGCGGATGTGTCTCAGGGCCCCGCAGCCAGACGCCTGCTGGAGGAAGTGCAGGCCTGCTTTTCTCGCC
CGCCATCTGTCGTTGTGTCCTGTGCGGGCATCACACGCGATGAGTTTCTGCTCCACATGTCAGAAGAAGA
CTGGGACAGAGTCATAGCTGTCAACCTCAAGGGCACCTTCCTAGTCACTCAGGCTGCAGCCCAGGCTTTA
GTGTCCAGTGGCGGTCGTGGCTCCATCATCAACATTAGTAGCATCATTGGAAAGGTGGGGAATATCGGAC
AAACGAATTATGCGTCGTCCAAAGCAGGAGTGATTGGGCTCACCCAGACTGCGGCCCGGGAGCTTGGACG
ACATGGAATCCGATGTAACTCGGTCCTCCCAGGGTTCATTGCAACGCCCATGACCCAGAAAATGCCAGAG
AAAGTGAAGGACAAGGTAACTGCAATGATTCCGTTGGGACACATGGGGGACCCTGAGGATGTGGCAGATG
TGGTTGCATTCTTGGCATCTGAAGACAGTGGATACATCACAGGGGCCTCCGTGGAAGTCAGTGGAGGTCT
TTTCATGTAA

Translation (259 aa):
MASQLRLRSALALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGSPGSEDGAPRGKHAAF
QADVSQGPAARRLLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQAL
VSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKMPE
KVKDKVTAMIPLGHMGDPEDVADVVAFLASEDSGYITGASVEVSGGLFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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