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Report for CCDS51023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51023.1 Public Mus musculus 3 Casq2 23 108 98 CCDS HistoryNCBI Gene:12373Re-query CCDS DB by CCDS ID:51023.1Re-query CCDS DB by GeneID:12373See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029454.11 ENSMUSP00000029454.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029454.11Link to Ensembl Protein Viewer:ENSMUSP00000029454.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029454Re-query CCDS DB by Protein ID:ENSMUSP00000029454
Original member Current member NCBI NM_009814.4 NP_033944.2 Accepted alive Link to Nucleotide Sequence:NM_009814.4Link to Protein Sequence:NP_033944.2Re-query CCDS DB by Nucleotide ID:NM_009814Re-query CCDS DB by Protein ID:NP_033944Link to BLAST:NP_033944.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033944.2 415 O09161 415 100% 0 0

Chromosomal Locations for CCDS 51023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102086639 102086872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102110240 102110324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102113065 102113165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102116864 102116975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102119917 102119990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102126549 102126679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102127941 102127986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102133377 102133431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102142180 102142280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102144154 102144228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102145197 102145430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAAGAGGATTTACCTGCTCATGGTGGGGGTTTATCTGCTGTCCCTGAGCGGGGCAGAAGAGGGGCTGA
ACTTCCCCACGTACGATGGGAAAGACCGAGTGGTCAGCCTTTCTGAGAAGAACCTCAAGCAGATGTTGAA
GAGATATGATTTGCTCTGTCTCTATTACCACGAACCTGTGTCTTCAGACAAGGTCTCACAAAAACAGTTC
CAGCTGAAGGAGATTGTACTGGAGCTTGTGGCCCAGGTCCTGGAACATAAAAACATAGGCTTTGTGATGG
TGGATTCGAGGAAAGAGGCCAAGCTTGCTAAGAGGCTGGGATTCAGTGAAGAAGGAAGCCTGTATGTTCT
GAAGGGTGACCGCACGATTGAGTTTGACGGGGAGTTCGCAGCAGATGTCTTAGTGGAATTTCTCTTGGAT
CTCATTGAAGACCCAGTGGAGATCGTGAATAACAAGCTGGAGGTCCAGGCCTTTGAGCGCATCGAGGACC
AGACCAAGCTCCTTGGCTTCTTCAAGAATGAGGACTCAGAATATTACAAAGCATTCCAAGAGGCAGCTGA
ACACTTCCAGCCTTACATCAAGTTCTTTGCCACCTTTGACAAGGCGGTGGCAAAGAAGTTATCCTTGAAG
ATGAACGAAGTTGGCTTCTATGAGCCATTTATGGATGAGCCCAACGTCATCCCTAACAAACCGTACACAG
AAGAGGAGCTTGTGGAGTTTGTGAAGGAACATCAAAGACCCACCCTACGTCGCTTGCGCCCAGAGGACAT
GTTTGAAACATGGGAAGACGACTTGAATGGGATCCACATCGTGGCCTTTGCGGAGAAGAGTGACCCAGAT
GGCTATGAGTTCCTAGAGATCCTGAAACAGGTTGCCCGGGACAACACTGACAATCCTGACTTGAGCATCT
TGTGGATTGACCCAGATGACTTTCCACTGCTTGTTGCTTACTGGGAGAAGACTTTCAAGATTGACCTGTT
CAAGCCACAGATTGGGGTGGTGAATGTAACCGATGCTGACAGTATCTGGATGGAGATCCCAGATGATGAC
GACCTGCCCACAGCTGAGGAGCTGGAAGACTGGATTGAAGATGTGCTTTCTGGAAAGATCAACACTGAAG
ATGATGACAATGAAGATGAAGATGATGATGGTGATGACAACGATGACGATGATGATGACGACGATGATAA
TGATAATTCTGATGAGGATAATGAAGACAGTGATGATGACGATGATGACGATGAATAG

Translation (415 aa):
MKRIYLLMVGVYLLSLSGAEEGLNFPTYDGKDRVVSLSEKNLKQMLKRYDLLCLYYHEPVSSDKVSQKQF
QLKEIVLELVAQVLEHKNIGFVMVDSRKEAKLAKRLGFSEEGSLYVLKGDRTIEFDGEFAADVLVEFLLD
LIEDPVEIVNNKLEVQAFERIEDQTKLLGFFKNEDSEYYKAFQEAAEHFQPYIKFFATFDKAVAKKLSLK
MNEVGFYEPFMDEPNVIPNKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAEKSDPD
GYEFLEILKQVARDNTDNPDLSILWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSIWMEIPDDD
DLPTAEELEDWIEDVLSGKINTEDDDNEDEDDDGDDNDDDDDDDDDNDNSDEDNEDSDDDDDDDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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