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Report for CCDS27157.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27157.2 Public Mus musculus 14 Eef1akmt1 23 108 98 CCDS HistoryNCBI Gene:68043Re-query CCDS DB by CCDS ID:27157.2Re-query CCDS DB by GeneID:68043See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27157.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27157.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239099.1 ENSMUSP00000159159.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239099.1Link to Ensembl Protein Viewer:ENSMUSP00000159159.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239099Re-query CCDS DB by Protein ID:ENSMUSP00000159159
Original member Current member NCBI NM_026526.3 NP_080802.2 Accepted alive Link to Nucleotide Sequence:NM_026526.3Link to Protein Sequence:NP_080802.2Re-query CCDS DB by Nucleotide ID:NM_026526Re-query CCDS DB by Protein ID:NP_080802Link to BLAST:NP_080802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080802.2 214 Q9CY45 214 100% 0 0

Chromosomal Locations for CCDS 27157.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 57549743 57549879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57550362 57550642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57558034 57558116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57565922 57566065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAGTGAGTCAGAAGACGACGACATACCCCAGCTCTCTTCCCATACCTTAGCAGCTCTCCAGGAGTTTT
ATGCTGAGCAGAAGCAATCCGTCAACCCCAGAGGGGATGATAAATATAACGTTGGGGTAATAGAGGAGAA
CTGGCAGCTGAGCCAGTTCTGGTACAGTCAGGACACTGCTTTGCGACTTGCACGGGAAGCGATCGATGCT
GCTGGAGAAGGAGGCAGAATCGCGTGTGTGAGCGCGCCAAGCGTGTACCAGAAGCTCCGGGAGCTCTGTA
GGGAAGACAGCTCTGTCTACATCTTTGAATACGACAGAAGATTCGCCATATATGGGGATGAATTTATCTT
CTATGATTACAACCATCCACTGGAGTTGCCTGAGAGAATCGCTGCGCATAGCTTTGACCTTGTGGTTGCA
GACCCTCCTTACCTGTCTGAGGAATGTCTCAGGAAGACATCTGAAACGATCCAGTTTCTGACTCGGGGCA
AGATTCTGCTGTGCACAGGAGCCATCATGGAAGAGCAGGCAGCTCAGCTCCTGGGTGTGAAGATGTGCAA
GTTTATTCCGGAACACTCCCGAAACTTGGCCAATGAGTTCCGCTGTTACACGAACTATGACTCTGGGCTG
GACTGTGAAGCCTAA

Translation (214 aa):
MSESEDDDIPQLSSHTLAALQEFYAEQKQSVNPRGDDKYNVGVIEENWQLSQFWYSQDTALRLAREAIDA
AGEGGRIACVSAPSVYQKLRELCREDSSVYIFEYDRRFAIYGDEFIFYDYNHPLELPERIAAHSFDLVVA
DPPYLSEECLRKTSETIQFLTRGKILLCTGAIMEEQAAQLLGVKMCKFIPEHSRNLANEFRCYTNYDSGL
DCEA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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