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Report for CCDS51900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51900.1 Public Mus musculus 6 Vmn2r22 23 108 98 CCDS HistoryNCBI Gene:546913Re-query CCDS DB by CCDS ID:51900.1Re-query CCDS DB by GeneID:546913See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170808.2 ENSMUSP00000132043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170808.2Link to Ensembl Protein Viewer:ENSMUSP00000132043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170808Re-query CCDS DB by Protein ID:ENSMUSP00000132043
Original member Current member NCBI NM_001104637.1 NP_001098107.1 Accepted alive Link to Nucleotide Sequence:NM_001104637.1Link to Protein Sequence:NP_001098107.1Re-query CCDS DB by Nucleotide ID:NM_001104637Re-query CCDS DB by Protein ID:NP_001098107Link to BLAST:NP_001098107.1

Chromosomal Locations for CCDS 51900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123609758 123610650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123626435 123626558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123628903 123629127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123637310 123638116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123648963 123649260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123650421 123650635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGAAATTACTCATTGCTTTCTCTCTCTGGATTGTGCTCATTGTACTCCAGGAACAAATTTCTTGTTACT
TTTTAAGTATTTCTGCTTCTCCTGGCTACTATCAAGATGGGGATTTTGTGATTGGAGGATTCTTCTCCCT
TAAATTGTCAGGTAGACACAGCAAAAATAAATTTACTTCTGGAAATGAATACAATATACCAGAATATGTT
TACATTGATTTCACCAAACACTATCAGCACATATTGGCTATGGTTTTTGCTATAGAAAAAATCAACAAGG
ACCCAAATATTCTGTTCAATATGTCCCTGGGATTCCATGTCTTCAATGCTGACTTTACGGAGATGAAGGC
CATGAAAAGTTCTATGGTTTTGCTCTCAGGAGAGAGCCCCCCAATTCCTAACTACAGCTGCAGGCCTGAG
AAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACAGGAATATCAACTCAGATCTCCCGAGTTC
TAAGTCTCTACAATGTCCCACAGATCAGCTATGCTCCTTTTGATCAGAGTCTTGGGACCAGTGTCCAGCT
CCAGTCTCCTTACCAGTTTACTGTGCACACTGCAGCTCTGTATCAGGGAATTATTCAACTGCTGCTATAC
TTCACTTGGGTCTGGGTTGGCCTAGTAGTCCCAGATGATATTCGGGGAGAACTCTTCCTTAGGGACATCA
CAGAGGAGATGATGAACCATGGACTTTGTGTTGCATTTGCAGAAAAGGTTCCAGAAATTCTAGGTGAGAA
TACAGTAAACAGGAAACGTTTTATGGAAAGATTCTCATTGACACGTGTTATCATTGCATTTGGTGACACA
TATTCTCTTCTGGCACTTCCTGTTCACACCACTTTCTATACTACTTTTCATAATGTCTGGATCACAACTT
CTGATTGGGATATCACATTTTATTTTCAGCAACCTATAAGTTATAAATACTTTGGTGGAGGATTATCATT
TTCTGATCGCATGGATCAAATTCTGGGATTCAAAGATTTTCTCAAAAATATTCAACCTAGAAAATACCCT
CAAGATATCTTTATTCAGGATGTATGGATAATCTTATTTGAATGTCCATATTTAATTGATCATGAAGCCA
GGCAACTAAGTCAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGTTTGGGATATGAATAC
CTCACCCTATAGCTCAAAAGTCCATGCTGCTGTGTATGCCATTGCCCAGGCACTCCATGAGGAGCTGTCC
CTCAGAGTGGAAGGAGGCTCACTGGATAGAAGTGCACTCCGGGCTCCTCTTCCTTGGAAGCTCCATCCAT
TCTTGCAAAAGGGACAGCTTGGGAGAAGTTCCAATAAGGAGAACATTGTGAACAAGGAGATTTTGGCAAC
CGAGTTTGACATCTTTAATTACCAGTCTCTGCAGAGTGGTACAAAAGCTCAAGTGAAAGTTGGCGAGTTT
GTCTTTGAATCTCACAGAGTTCAACATTTTTCAATAAATGAAAAACTCATAACTTGGGGCAAATATGGCA
AGGGGATTCCTTTATCTGTTTGCAGTCAAAGCTGTCCACTCGGATTTAGGAAAACACCTGTTGAAGGGAA
ATCATTCTGTTGTTTTGATTGTCTCCCATGTCCAGAGGGAGAGGTTGCAAATGATACAGATATGGATCAG
TGCATCAAGTGTCCTGAAGATCAGTATCCAAATAAGCAGAAGAATAACTGTCTTCCTAAAATTAAGATAT
TTTTGTCCCATGAAGATACTCTGGGAGCTGTTTTGGTCTCCTTGGCCATTAGTTTATCTGCCTTTTCAGC
CATGATTTTAGGATTATTTATCCACTATCGGGACACACCCATTGTCAGAGCAAATAACAGAAATCTCAGC
TATGTCCTCCTAGTTTCTCTAATGCTCTGTTTCTTTTGCTCATTAATATTCATTGGCCAACCTAGCACAG
TCACTTGTGTCTTGAGACAAATGATCTTTGGGGTTGTATTTTCTGTTGCTGTGTCTGCTATCTTGGCAAA
GACTTTCATTGTGGTTGTGGCCTTCACAGCCATCAAACCAGGAAGCACATTGCAAATGTGGATGGTGACA
CGACTTTCAAATGCTATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAA
CATATCCCCCTTTCCCTGATGCTGACATGCACTCAGAGTTTGGGCAAATCATCCTCTGGTGTAATGAGGG
ATCCACCCTTGCATTCTATTGTGTTCTAGGGTACTTGGGCTTTCTGTCCAGCCTCAGCTTGCTTATTGCT
TTTCTGGCCAGAAGGCTACCAGAGAGCTTCAATGAGGCAAAAACAATCACGTTCAGCATGTTGGTTTTCT
GCACTGTGTGGATTACTTTTGTACCCACATACCTGAGCTCCAAAGGTAAAACCATGGTGGCAGTGGAGAT
TCTTTCAATTCTGGCCTCCAGTTCTATCTTACTACTCTGTATATTCCTTCCCAAATGCTATGTGATCCTA
CTGAGGTCAGGTGGCCATTCTAGAAAGAAGTTTTTTAAATGA

Translation (853 aa):
MKLLIAFSLWIVLIVLQEQISCYFLSISASPGYYQDGDFVIGGFFSLKLSGRHSKNKFTSGNEYNIPEYV
YIDFTKHYQHILAMVFAIEKINKDPNILFNMSLGFHVFNADFTEMKAMKSSMVLLSGESPPIPNYSCRPE
KTDKLVAVIGGISTGISTQISRVLSLYNVPQISYAPFDQSLGTSVQLQSPYQFTVHTAALYQGIIQLLLY
FTWVWVGLVVPDDIRGELFLRDITEEMMNHGLCVAFAEKVPEILGENTVNRKRFMERFSLTRVIIAFGDT
YSLLALPVHTTFYTTFHNVWITTSDWDITFYFQQPISYKYFGGGLSFSDRMDQILGFKDFLKNIQPRKYP
QDIFIQDVWIILFECPYLIDHEARQLSQCEPNGSLSTRPLHVWDMNTSPYSSKVHAAVYAIAQALHEELS
LRVEGGSLDRSALRAPLPWKLHPFLQKGQLGRSSNKENIVNKEILATEFDIFNYQSLQSGTKAQVKVGEF
VFESHRVQHFSINEKLITWGKYGKGIPLSVCSQSCPLGFRKTPVEGKSFCCFDCLPCPEGEVANDTDMDQ
CIKCPEDQYPNKQKNNCLPKIKIFLSHEDTLGAVLVSLAISLSAFSAMILGLFIHYRDTPIVRANNRNLS
YVLLVSLMLCFFCSLIFIGQPSTVTCVLRQMIFGVVFSVAVSAILAKTFIVVVAFTAIKPGSTLQMWMVT
RLSNAIVCCGSIIQVCICAVWLGTYPPFPDADMHSEFGQIILWCNEGSTLAFYCVLGYLGFLSSLSLLIA
FLARRLPESFNEAKTITFSMLVFCTVWITFVPTYLSSKGKTMVAVEILSILASSSILLLCIFLPKCYVIL
LRSGGHSRKKFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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