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Report for CCDS21590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21590.1 Public Mus musculus 7 Or52a5b 23 108 98 CCDS HistoryNCBI Gene:18370Re-query CCDS DB by CCDS ID:21590.1Re-query CCDS DB by GeneID:18370See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106878.2 ENSMUSP00000102491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106878.2Link to Ensembl Protein Viewer:ENSMUSP00000102491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106878Re-query CCDS DB by Protein ID:ENSMUSP00000102491
Original member Current member NCBI NM_013621.3 NP_038649.2 Accepted alive Link to Nucleotide Sequence:NM_013621.3Link to Protein Sequence:NP_038649.2Re-query CCDS DB by Nucleotide ID:NM_013621Re-query CCDS DB by Protein ID:NP_038649Link to BLAST:NP_038649.2

Chromosomal Locations for CCDS 21590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103767445 103768395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGATCAAGTTCAATGGCTCAGTCTTCATGCCTTCTGTTTTAACACTAGTGGGGATCCCTGGCCTGGAAT
CAGTGCAGTGCTGGATTGGAATTCCATTCTGTGTCATGTACATCATTGCTATGATTGGGAACTCCCTAAT
TTTAGTTATAATCAAAAGTGAAAAGAGCCTCCACATACCCATGTATATTTTCTTGGCTATTTTGGCAGTC
ACAGACATTGCCCTTAGCACATGCATTCTTCCCAAAATGTTGGGCATCTTCTGGTTTCACATGCCACAGA
TTTCCTTTGATGCCTGCCTGCTGCAGATGGAACTCATCCACTCATTCCAGGCCACAGAATCAGGCATCCT
CCTGGCCATGGCTCTGGATCGCTATGTGGCTATCTGCAACCCCCTCAGACATGCTACTATCTTCTCTCCA
CAACTCACCACTTGCCTTGGAGCTGGTGCATTACTGAGGTCTCTCATTACCACATTTCCATTGATATTGC
TCATCAAATGTCGCCTTAAGTACTTTCGAACTACCATTATCTCCCACTCGTACTGTGAACACATGGCCAT
TGTGAAATTGGCAGCTCAAGATATCAGAATCAACAAGATATGTGGCCTCCTTGTTGCCTTTGCCATCTTA
GGGTTTGACATAGTCTTCATTACCTTCTCCTATGTGCGAATCTTCATCACGGTCTTCCAGCTGCCCCAGA
AGGAGGCTCGATTCAAAGCCTTCAATACCTGCATTGCTCACATCTGTGTCTTCCTGCAGTTCTACCTTCT
GGCCTTCTTCTCTTTCTTCACACACAGGTTTGGGGCTCACATACCCCCCTATGTGCACATCCTCCTGTCA
GACCTTTACCTGTTAGTCCCACCTTTTCTGAACCCCATTGTTTATGGTGTTAAAACTAAACAAATCCGTG
ACCAAGTCCTGAAAATGCTTTTCTCCAAGAAACCCCTGTGA

Translation (316 aa):
MIKFNGSVFMPSVLTLVGIPGLESVQCWIGIPFCVMYIIAMIGNSLILVIIKSEKSLHIPMYIFLAILAV
TDIALSTCILPKMLGIFWFHMPQISFDACLLQMELIHSFQATESGILLAMALDRYVAICNPLRHATIFSP
QLTTCLGAGALLRSLITTFPLILLIKCRLKYFRTTIISHSYCEHMAIVKLAAQDIRINKICGLLVAFAIL
GFDIVFITFSYVRIFITVFQLPQKEARFKAFNTCIAHICVFLQFYLLAFFSFFTHRFGAHIPPYVHILLS
DLYLLVPPFLNPIVYGVKTKQIRDQVLKMLFSKKPL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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