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Report for CCDS90381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90381.1 Public Mus musculus 8 Rnf122 23 108 98 CCDS HistoryNCBI Gene:68867Re-query CCDS DB by CCDS ID:90381.1Re-query CCDS DB by GeneID:68867See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217278.1 ENSMUSP00000150893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217278.1Link to Ensembl Protein Viewer:ENSMUSP00000150893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217278Re-query CCDS DB by Protein ID:ENSMUSP00000150893
Original member Current member NCBI NM_001368375.1 NP_001355304.1 Accepted alive Link to Nucleotide Sequence:NM_001368375.1Link to Protein Sequence:NP_001355304.1Re-query CCDS DB by Nucleotide ID:NM_001368375Re-query CCDS DB by Protein ID:NP_001355304Link to BLAST:NP_001355304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355304.1 155 Q8BP31 155 100% 0 0

Chromosomal Locations for CCDS 90381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31112148 31112172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31118431 31118587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31124852 31124897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31125166 31125207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31128252 31128334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31128579 31128693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGCACCCATTCCAGTGGTGTAACGGGTGTTTCTGTGGCCTGGGACTGGTTAGTACCAACAAGTCCTGCT
CAATGCCACCGATCAGTTTCCAAGACCTTCCCCTCAATATCTACATGGTCATCTTCGGCACAGGCATCTT
CGTCTTCATGCTTAGCCTCATCTTCTGCTGCTACTTCATCAGCAAACTCCGGAACCAGGCTCAGAGCGAG
CGATACGGCTACAAGGAGGTGGTGCTTAAAGGTGATGCTAAGAAGTTACAGCTCTATGGGCAGACCTGTG
CAGTTTGCCTGGAAGACTTCAAGGGGAAGGATGAACTAGGCGTGCTTCCATGCCAGCATGCCTTTCACCG
CAAGTGTCTGGTGAAGTGGCTAGAAGTACGTTGTGTCTGCCCCATGTGCAACAAGCCCATCGCGGGCCCC
ACGGAGACCTCGCAGAGCATCGGGATCCTGCTGGATGAACTGGTGTAA

Translation (155 aa):
MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSE
RYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGP
TETSQSIGILLDELV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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