NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52169.1 Public Mus musculus 7 Psmd8 23 108 98 CCDS HistoryNCBI Gene:57296Re-query CCDS DB by CCDS ID:52169.1Re-query CCDS DB by GeneID:57296See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059642.16 ENSMUSP00000051657.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059642.16Link to Ensembl Protein Viewer:ENSMUSP00000051657.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000059642Re-query CCDS DB by Protein ID:ENSMUSP00000051657
Original member Current member EBI ENSMUST00000186182.1 ENSMUSP00000139514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186182.1Link to Ensembl Protein Viewer:ENSMUSP00000139514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186182Re-query CCDS DB by Protein ID:ENSMUSP00000139514
Original member Current member NCBI NM_026545.3 NP_080821.3 Accepted alive Link to Nucleotide Sequence:NM_026545.3Link to Protein Sequence:NP_080821.3Re-query CCDS DB by Nucleotide ID:NM_026545Re-query CCDS DB by Protein ID:NP_080821Link to BLAST:NP_080821.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080821.3 353 Q9CX56 353 100% 0 0

Chromosomal Locations for CCDS 52169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29174610 29174747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29175411 29175522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29176073 29176173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29177066 29177231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29178919 29179021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29179143 29179215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29180277 29180645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGTTCATTAAGGGTCGGGCTGCGAAGACACCCCGAGGAGAGCCGCGGCGCTCCTCCCGCGGGGGGCGGA
AACTGGCAGTGGTAGCTCCGCCTCCAGTTTTGGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTCCAT
TGCCCGGCGTCGCTGCCGTAAGTCGGGTCGGCGGCTTGCCGCATCACGGAAGATGGCGGCCACAGCGGCT
ACGGTGAACGGGTCGACCACCGTCTCGAGCTCCGGACCCGCGGCCACCTCGGTCGGGATCCTGCAGGCAG
CGGCCGGCATGTACGAGCAACTCAAGGACGAGTGGAACCGGAAGAACCCGAACCTTAGTAAATGTGGAGA
AGAACTGGGCCGCCTGAAGTTGGTTCTGCTTGAGCTCAATTTCCTGCCAACCACGGGGACCAAACTGACT
AAACAGCAACTCATTCTGGCCCGTGACATTCTGGAGATCGGGGCCCAGTGGAGCATCCTGTGCAAAGACA
TTCCCTCCTTCGAGCGCTACATGGCCCAACTCAAATGCTACTACTTTGATTACAAAGAACAGCTTCCTGA
GTCAGCCTATATGCACCAGCTCCTGGGCCTCAATCTCCTCTTCCTGCTATCTCAGAACCGAGTGGCTGAG
TTCCACACAGAATTAGAACGATTACCTGCCAAGGACATCCAGACCAATGTCTACATCAAACACCCTGTTT
CCCTCGAGCAATACCTCATGGAGGGTAGCTACAACAAGGTATTCCTGGCTAAGGGGAACATCCCTGCCGA
AAGCTACACCTTCTTCATTGACATCCTGCTGGATACCATCAGGGATGAAATCGCAGGATGCATTGAGAAG
GCCTATGAGAAAATCCTTTTTGCTGAGGCTACCCGGATCCTCTTCTTCAGCACACCCAAAAAGATGACAG
ACTATGCCAAGAAGCGAGGTTGGGTGCTGGGCCCTAACAACTACTACAGCTTTGCCAGCCAGCAGCAGAA
GCCAGAAGACAGCACCATCCCCTCTACTGAACTGGCCAAACAAGTCATCGAGTATGCCCGGCAGCTGGAG
ATGATTGTCTGA

Translation (353 aa):
MFIKGRAAKTPRGEPRRSSRGGRKLAVVAPPPVLGSTSRPHFRRESIARRRCRKSGRRLAASRKMAATAA
TVNGSTTVSSSGPAATSVGILQAAAGMYEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTTGTKLT
KQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAE
FHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEK
AYEKILFAEATRILFFSTPKKMTDYAKKRGWVLGPNNYYSFASQQQKPEDSTIPSTELAKQVIEYARQLE
MIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH