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Report for CCDS15006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15006.1 Public Mus musculus 1 Mettl21a 23 108 98 CCDS HistoryNCBI Gene:67099Re-query CCDS DB by CCDS ID:15006.1Re-query CCDS DB by GeneID:67099See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053469.1 ENSMUSP00000050424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053469.1Link to Ensembl Protein Viewer:ENSMUSP00000050424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053469Re-query CCDS DB by Protein ID:ENSMUSP00000050424
Original member Current member EBI ENSMUST00000114079.8 ENSMUSP00000109713.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114079.8Link to Ensembl Protein Viewer:ENSMUSP00000109713.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114079Re-query CCDS DB by Protein ID:ENSMUSP00000109713
Original member Current member NCBI NM_001368283.1 NP_001355212.1 Accepted alive Link to Nucleotide Sequence:NM_001368283.1Link to Protein Sequence:NP_001355212.1Re-query CCDS DB by Nucleotide ID:NM_001368283Re-query CCDS DB by Protein ID:NP_001355212Link to BLAST:NP_001355212.1
Original member Current member NCBI NM_001368284.1 NP_001355213.1 Accepted alive Link to Nucleotide Sequence:NM_001368284.1Link to Protein Sequence:NP_001355213.1Re-query CCDS DB by Nucleotide ID:NM_001368284Re-query CCDS DB by Protein ID:NP_001355213Link to BLAST:NP_001355213.1
Original member Current member NCBI NM_025964.4 NP_080240.1 Accepted alive Link to Nucleotide Sequence:NM_025964.4Link to Protein Sequence:NP_080240.1Re-query CCDS DB by Nucleotide ID:NM_025964Re-query CCDS DB by Protein ID:NP_080240Link to BLAST:NP_080240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355212.1 218 Q9CQL0 218 100% 0 0
NP_001355213.1 218 Q9CQL0 218 100% 0 0
NP_080240.1 218 Q9CQL0 218 100% 0 0

Chromosomal Locations for CCDS 15006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64607740 64608137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64615098 64615209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64616273 64616419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCCCTGGTACCCTATGAGGAGAGCGCGGCAATAGGGCTCCAGAAATTCCATAAGCCTCTCGCCACCT
TCTCTTTTGCGAACCACACCATCCAGATCCGTCAGGACTGGAGGCAACTGGGAGTTGCTGCAGTGGTGTG
GGATGCGGCTGTCGTCCTTTCCATGTATCTGGAGATGGGTGCTGTGGAGCTCAGGGGCTGCTCTGCTGTG
GAGCTGGGTGCTGGCACAGGGCTGGTGGGCATAGTGGCTGCCCTGCTGGGTGCTCAGGTGACTATCACGG
ATCGGAAAGTAGCATTAGAGTTTCTTAAGTCAAACGTTGAAGCCAACTTACCTCCCCATATCCAACCTAA
GGCTGTTGTTAAGGAGCTGACTTGGGGACAAAATTTGGAAAGTTTTTCACCTGGAGAATTTGATCTCATA
CTTGGAGCTGATGTCATATACTTAGAAGATACCTTCACAGACCTTCTTCAAACACTGGGACATCTCTGTA
GCAACAATTCTGTGATTCTTTTAGCTTGCCGAATCCGCTATGAACGGGATAGTAACTTCTTAACAATGCT
GGAGAGGCAATTCACTGTGAGTAAGGTTCACTACGATCCTGAGAAGGACGTACACATTTACAAAGCACAG
AAGAGAAACCAGAGGGAGGACTTGTAG

Translation (218 aa):
MALVPYEESAAIGLQKFHKPLATFSFANHTIQIRQDWRQLGVAAVVWDAAVVLSMYLEMGAVELRGCSAV
ELGAGTGLVGIVAALLGAQVTITDRKVALEFLKSNVEANLPPHIQPKAVVKELTWGQNLESFSPGEFDLI
LGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYERDSNFLTMLERQFTVSKVHYDPEKDVHIYKAQ
KRNQREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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