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Report for CCDS49672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49672.1 Public Mus musculus 15 Fam83f 23 108 98 CCDS HistoryNCBI Gene:213956Re-query CCDS DB by CCDS ID:49672.1Re-query CCDS DB by GeneID:213956See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023044.6 ENSMUSP00000023044.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023044.6Link to Ensembl Protein Viewer:ENSMUSP00000023044.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023044Re-query CCDS DB by Protein ID:ENSMUSP00000023044
Original member NCBI NM_145986.2 NP_666098.2 Updated not alive Link to Nucleotide Sequence:NM_145986.2Link to Protein Sequence:NP_666098.2Re-query CCDS DB by Nucleotide ID:NM_145986Re-query CCDS DB by Protein ID:NP_666098
Current member NCBI NM_145986.3 NP_666098.2 Accepted alive Link to Nucleotide Sequence:NM_145986.3Link to Protein Sequence:NP_666098.2Re-query CCDS DB by Nucleotide ID:NM_145986Re-query CCDS DB by Protein ID:NP_666098Link to BLAST:NP_666098.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666098.2 495 Q3UKU4 495 99.798% 0 1

Chromosomal Locations for CCDS 49672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 80671917 80672387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80689917 80690084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80690533 80690654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80691911 80692596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80698950 80698990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGCCGAGTCCCAACTGAGCTGCCTGGACGAGGCGCACGTGAACGAGAGGGTGACCGAGGCACATGCAG
CTTTCTACTACTGCGAGAGGCGGCGGGCCGCGCTGGAGGCGCTGCTGGGTGGAGGCGAGCAGGCCTACCG
CGAACTGGTCAAGAAGGAGCGGCTGCGGGACTTCCTCTCCAGCCAGGAGCGCCAGGCCCTCTGCGCCGCC
TGGAGCCCCTACGAGGAGGCAGTCTCCAGCACCCGTGCCAAGGCTAAGGCCAAGGCCAAGGTCCCGGCCC
AGCCCACTGAGTCCCTGGCCTACTGGCCAGACCGCTCGGACACCGAAGTGCCCCCACTGGACCTGGGGTG
GACAGACACCAACTTCTACCGCGGTGTGAGCCGAGTCACGCTCTTCACCCACCCGCCCAAAGAAGAGAAG
GCACCGCACCTGAAGCAGGTGGTCAGGCAGATGATCCAGCAGGCCCAGAAGGTCATTGCTGTGGTCATGG
ATCTTTTCACTGATGGGGATATATTCCAAGACATTGTGGATGCTGCCTGTAAACGCCGGGTTCCTGTATA
CATCATCCTGGATGAGGGTGGAGTGAAATACTTTTTGGAGATGTGTCAGGGCCTAGAGCTTGCAGACTTC
CGCATTCGGAACATCCGTGTCCGCTCTGTGACAGGAATTGGGTTCTACATGCCCATGGGGAAGATCAAGG
GGACTCTCTCATCAAAGTTCCTGATGGTCGATGGGGACAAAGTAGCTACCGGCTCTTTCAGCTTTACCTG
GAGCTCCTCCTATGTGGACAGGAATCTCCTCTTGCTCCTGACAGGACAGAACATGGAGCCCTTTGACATA
GAGTTCCGGGAGCTGTATGCCATCTCGGAGGAAGTGAACTTGCACCAGCACCTGGGCCTGGCAGGCAGGA
TTGGCCTCAACTACTCCTCCACGGTAGCTCGAAAGCTTATCAACCCCAAGTACGCATTGGTGGCAGGCAC
CCGCCGTCCTCCAGGAGAGATGATGCGCTGGGCGGCCCGGCAGCAGCGAGAAGCTGGTGGCAACGTAGAG
GGGCAGGAGGAGGGCAGTGGCGGTGGTGAGTCTGCCCGGCGTCTGGAGAGCTTTCTGAATGACCTGGTCA
CAGTAGAGCAGATATTGCCCACTGTGGAGCCCATTTCCCCAAGATTGCAGAGACCTACCAATGGCAGACC
GGTCTCTCATGCACACACAGACGCGAAGCACAGGTCCCGAGAGGCACTGCCCCAGAATGGCAAGGGAGAA
GCTGCCAATGGGGAGGCCACCCCAGCCAAGGAGGGCAAACGCTTCAGCAGCAGGCTCTTCAGCCGTCGAG
TGAAGAGGCCTGCAGTGCCCAGCAGCATGGCCAGCTCCCCCTCCACTGAGACGTTTGCCGATGTGGAGTT
TCCTCTGGGAAAGAGGCACAATGAGGGTTCCAATGCCAACATATCAGGTAAAGGAATCACCAAGGCCAGC
AACTGTGTGATCTCCTGA

Translation (495 aa):
MAESQLSCLDEAHVNERVTEAHAAFYYCERRRAALEALLGGGEQAYRELVKKERLRDFLSSQERQALCAA
WSPYEEAVSSTRAKAKAKAKVPAQPTESLAYWPDRSDTEVPPLDLGWTDTNFYRGVSRVTLFTHPPKEEK
APHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYIILDEGGVKYFLEMCQGLELADF
RIRNIRVRSVTGIGFYMPMGKIKGTLSSKFLMVDGDKVATGSFSFTWSSSYVDRNLLLLLTGQNMEPFDI
EFRELYAISEEVNLHQHLGLAGRIGLNYSSTVARKLINPKYALVAGTRRPPGEMMRWAARQQREAGGNVE
GQEEGSGGGESARRLESFLNDLVTVEQILPTVEPISPRLQRPTNGRPVSHAHTDAKHRSREALPQNGKGE
AANGEATPAKEGKRFSSRLFSRRVKRPAVPSSMASSPSTETFADVEFPLGKRHNEGSNANISGKGITKAS
NCVIS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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