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Report for CCDS37623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37623.1 Public Mus musculus 17 Mep1a 23 108 98 CCDS HistoryNCBI Gene:17287Re-query CCDS DB by CCDS ID:37623.1Re-query CCDS DB by GeneID:17287See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024707.8 ENSMUSP00000024707.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024707.8Link to Ensembl Protein Viewer:ENSMUSP00000024707.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024707Re-query CCDS DB by Protein ID:ENSMUSP00000024707
Original member Current member NCBI NM_008585.3 NP_032611.2 Accepted alive Link to Nucleotide Sequence:NM_008585.3Link to Protein Sequence:NP_032611.2Re-query CCDS DB by Nucleotide ID:NM_008585Re-query CCDS DB by Protein ID:NP_032611Link to BLAST:NP_032611.2

Chromosomal Locations for CCDS 37623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43474953 43475109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43477077 43477377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43478098 43478271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43478806 43479276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43482171 43482386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43486211 43486360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43487089 43487310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43491580 43491755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43494859 43494976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43497900 43497975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43499391 43499431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43502388 43502438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43502541 43502565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43502653 43502757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGGCAAGGAGGCTTGGCAGATCCAGTTCATTTGCAATAATGCTTTGGATACAACCTGCGTGTCTTCTCT
CACTGATTTTTTCTGCCCACATAGCAGCTGTATCGATTAAGCATCTTTTGAATGGATCTGATCACGATAC
AGATGTTGGTGAACAGAAGGATATTTTCGAAATCAATTTAGCTGCAGGCCTGAACCTCTTTCAAGGGGAC
ATCCTTCTGCCCAGAACCAGAAATGCCATGCGAGATCCCTCAAGCAGATGGAAGCTCCCCATTCCATACA
TTCTGGCTGACAATCTGGAGCTGAATGCCAAAGGAGCCATCCTCCATGCCTTTGAGATGTTCCGCCTCAA
GTCTTGTGTGGATTTCAAGCCCTACGAAGGGGAGAGTTCGTATATCATCTTCCAGAAACTTTCTGGGTGC
TGGTCTATGATTGGTGATCAACAGGTGGGACAGAACATTTCCATTGGTGAGGGATGTGACTTTAAGGCCA
CCATTGAACATGAAATCCTGCATGCTCTGGGATTCTTCCATGAGCAGTCAAGGACTGACCGGGATGATTA
TGTGAACATTTGGTGGGATCAAATCATTACAGACTATGAACATAATTTCAACACATATGACGACAACACC
ATCACAGACCTCAACACACCCTATGATTATGAGTCCCTGATGCACTACGGGCCATTTTCGTTTAACAAGA
ACGAAAGCATCCCTACCATTACTACCAAGATCCCTGAGTTTAACACCATCATTGGACAACTCCCGGACTT
CAGTGCCATTGATCTAATAAGACTGAATCGAATGTACAACTGCACCGCAACACATACTCTGTTGGACCAC
TGTGACTTTGAGAAGACCAACGTCTGTGGGATGATCCAGGGAACCAGAGATGATGCTGATTGGGCTCATG
GGGACAGCAGTCAGCCTGAACAAGTGGATCACACCTTGGTGGGACAGTGTAAAGGTGCCGGCTACTTCAT
GTTCTTCAATACCAGCTTGGGGGCAAGAGGAGAGGCAGCCCTTCTGGAGTCTCGAATCCTTTATCCCAAG
AGGAAGCAGCAGTGTTTGCAGTTTTTTTATAAGATGACTGGAAGCCCTGCAGACAGATTTGAAGTCTGGG
TGAGAAGGGACGACAACGCGGGCAAGGTGCGACAGCTGGCCAAGATCCAGACCTTTCAAGGAGACTCTGA
TCACAACTGGAAAATTGCTCATGTGACACTCAATGAAGAAAAGAAATTTCGCTATGTTTTCCTGGGTACC
AAAGGGGACCCTGGTAACTCAAGTGGTGGTATTTACCTTGATGACATCACTCTGACAGAAACCCCCTGCC
CTGCAGGGGTTTGGACCATCCGGAATATCTCCCAGATCCTTGAGAACACAGTGAAAGGGGACAAGCTCGT
GAGCCCTCGGTTCTACAATTCTGAGGGTTACGGTGTGGGGGTGACCTTGTACCCCAATGGTAGAATCACC
AGTAACTCTGGCTTCCTGGGACTCACTTTTCACTTGTACAGTGGGGATAACGATGCGATTCTGGAGTGGC
CAGTGGAAAACAGACAGGCCATAATGACCATCCTGGACCAGGAAGCTGATACCAGGAACAGGATGTCCCT
GACCTTGATGTTCACTACCTCCAAGAACCAAACATCTTCAGCTATAAATGGCTCTGTCATCTGGGACAGG
CCATCCAAGGTGGGAGTCTATGATAAGGACTGTGATTGTTTCAGAAGCCTTGACTGGGGCTGGGGTCAGG
CCATCTCCCACCAGCTGCTGAAGAGAAGAAATTTTCTTAAAGGCGACAGCCTCATCATTTTCGTGGACTT
TAAAGACCTCACCCACCTGAACCGGACTGAAGTTCCAGCTTCAGCCAGAAGCACGATGCCCAGAGGCCTC
CTTCTGCAAGGCCAGGAGTCTCCTGCCTTGGGAGAAAGCTCCAGAAAAGCCATGCTGGAGGAATCCCTGC
CAAGCAGCCTGGGCCAGAGACATCCCAGCAGACAGAAGCGCTCGGTGGAGAACACTGGCCCCATGGAGGA
CCACAACTGGCCACAGTACTTCAGAGACCCCTGTGACCCAAACCCTTGCCAGAATGAAGGCACCTGTGTG
AACGTAAAGGGAATGGCCAGCTGCAGGTGCGTCTCTGGGCACGCCTTTTTCTACGCAGGGGAGCGCTGTC
AGGCCATGCACGTGCACGGCAGCTTGCTGGGCCTGCTCATTGGCTGCATCGCTGGCTTGATCTTCTTGAC
CTTCGTCACATTCTCTACCACCAACGGAAAGCTGCGGCAGTGA

Translation (760 aa):
MARRLGRSSSFAIMLWIQPACLLSLIFSAHIAAVSIKHLLNGSDHDTDVGEQKDIFEINLAAGLNLFQGD
ILLPRTRNAMRDPSSRWKLPIPYILADNLELNAKGAILHAFEMFRLKSCVDFKPYEGESSYIIFQKLSGC
WSMIGDQQVGQNISIGEGCDFKATIEHEILHALGFFHEQSRTDRDDYVNIWWDQIITDYEHNFNTYDDNT
ITDLNTPYDYESLMHYGPFSFNKNESIPTITTKIPEFNTIIGQLPDFSAIDLIRLNRMYNCTATHTLLDH
CDFEKTNVCGMIQGTRDDADWAHGDSSQPEQVDHTLVGQCKGAGYFMFFNTSLGARGEAALLESRILYPK
RKQQCLQFFYKMTGSPADRFEVWVRRDDNAGKVRQLAKIQTFQGDSDHNWKIAHVTLNEEKKFRYVFLGT
KGDPGNSSGGIYLDDITLTETPCPAGVWTIRNISQILENTVKGDKLVSPRFYNSEGYGVGVTLYPNGRIT
SNSGFLGLTFHLYSGDNDAILEWPVENRQAIMTILDQEADTRNRMSLTLMFTTSKNQTSSAINGSVIWDR
PSKVGVYDKDCDCFRSLDWGWGQAISHQLLKRRNFLKGDSLIIFVDFKDLTHLNRTEVPASARSTMPRGL
LLQGQESPALGESSRKAMLEESLPSSLGQRHPSRQKRSVENTGPMEDHNWPQYFRDPCDPNPCQNEGTCV
NVKGMASCRCVSGHAFFYAGERCQAMHVHGSLLGLLIGCIAGLIFLTFVTFSTTNGKLRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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