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Report for CCDS6032.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6032.2 Public Homo sapiens 8 PDLIM2 24 110 108 CCDS HistoryNCBI Gene:64236Re-query CCDS DB by CCDS ID:6032.2Re-query CCDS DB by GeneID:64236See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6032.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The extended N-terminus appears to be restricted to higher primate species.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6032.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308354.11 ENSP00000312634.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308354.11Link to Ensembl Protein Viewer:ENSP00000312634.7Re-query CCDS DB by Nucleotide ID:ENST00000308354Re-query CCDS DB by Protein ID:ENSP00000312634
Original member Current member EBI ENST00000339162.11 ENSP00000342035.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339162.11Link to Ensembl Protein Viewer:ENSP00000342035.8Re-query CCDS DB by Nucleotide ID:ENST00000339162Re-query CCDS DB by Protein ID:ENSP00000342035
Original member Current member NCBI NM_021630.6 NP_067643.3 Accepted alive Link to Nucleotide Sequence:NM_021630.6Link to Protein Sequence:NP_067643.3Re-query CCDS DB by Nucleotide ID:NM_021630Re-query CCDS DB by Protein ID:NP_067643Link to BLAST:NP_067643.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067643.3 602 Q96JY6-5 602 100% 0 0

Chromosomal Locations for CCDS 6032.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22578780 22579527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22580603 22580697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22581379 22581530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22584821 22584890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22585017 22585162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22585321 22585399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22589298 22589374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22589596 22589741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22591551 22591668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22593733 22593910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGCGGGGCGGGAGAGCGCGGCCGGCGTGGGAGAGCTTTATGGGGCTGCCCCCTCGATCGTCTGCGAAGT
GGGGCGCGGGGCAGTCCCTGGACCGGCTCTGCTGTGCTCCGGGCAGTCGGGGGCTTGCGGGCGCTCCGGG
GAGGATGCGGGCACCACCGGCTGGACGGTCGCAGCCTGCAGGGGGCCCTGGGGACAGCCTGCCTCATCCC
CCCGGCGGGCTCGGGCCAGGTGGCAGCGCCTGGGCTCGCCGCGCGGAGGCGGCGGCTTCTCGGGCTAGGG
GCGGCGGCAGGGGCGGCCCCGGGATCACATGGGCGGAGGCAGGTCCGGGAGCCCCGGGCGGGCTCTCCCC
AGAGTCGGGTAGACGGCAGCGGGAGCGGTGGCGTCTCCCCGCCTTCCCTCCCTCCCGGGCCTGGGCGCCC
AGCCGGACAGGTGAGCGGCAGCCAGGTGAGCGCGCCCACCTGCGCCTCTCCGCGCGGCCCGCCCTCCCCG
GCGCCGGGCTCCTCTCCGCGCCCCTGTCGGCGCGGAACCCTGGCCTCGTCCGCGGCCCAGCTCCCTGGAG
CCTCGCATCAGCGGGGGCGCCCCCGCGAGCTGCGCTCTCCCCGGCCGGAGCGCTCCTCCTCCAGCCCCCA
GCCCGCAGGGTACTTTGCCCTCGGAGCGAAGGAGGCTCCAGAACTGGTAGAGCCGGGCCATCGGGCTGGG
CACCTCCCCGCGGCGCCCGCAGCGCGGAGTCCACTGACCGGCTCAAAGGTATGGCGTTGACGGTGGATGT
GGCCGGGCCAGCGCCCTGGGGCTTCCGTATCACAGGGGGCAGGGATTTCCACACGCCCATCATGGTGACT
AAGGTGGCCGAGCGGGGCAAAGCCAAGGACGCTGACCTCCGGCCTGGAGACATAATCGTGGCCATCAACG
GGGAAAGCGCGGAGGGCATGCTGCATGCCGAGGCCCAGAGCAAGATCCGCCAGAGCCCCTCGCCCCTGCG
GCTGCAGCTGGACCGGTCTCAGGCTACGTCTCCAGGGCAGACCAATGGGGACAGCTCCTTGGAAGTGCTG
GCGACTCGCTTCCAGGGCTCCGTGAGGACATACACTGAGAGTCAGTCCTCCTTAAGGTCCTCCTACTCCA
GCCCAACCTCCCTCAGCCCGAGGGCCGGCAGCCCCTTCTCACCACCACCCTCTAGCAGCTCCCTCACTGG
AGAGGCAGCCATCAGCCGCAGCTTCCAGAGTCTGGCATGTTCCCCGGGCCTCCCCGCTGCTGACCGCCTG
TCCTACTCAGGCCGCCCTGGAAGCCGACAGGCCGGCCTCGGCCGCGCTGGCGACTCGGCGGTGCTGGTGC
TGCCGCCTTCCCCGGGCCCTCGTTCCTCCAGGCCCAGCATGGACTCGGAAGGGGGAAGCCTCCTCCTGGA
CGAGGACTCGGAAGTCTTCAAGATGCTGCAGGAAAATCGCGAGGGACGGGCGGCCCCCCGACAGTCCAGC
TCCTTTCGGCTCTTGCAGGAAGCCCTGGAGGCTGAGGAGAGAGGTGGCACGCCAGCCTTCTTGCCCAGCT
CACTGAGCCCCCAGTCCTCCCTGCCCGCCTCCAGGGCCCTGGCCACCCCTCCCAAGCTCCACACTTGTGA
GAAGTGCAGTACCAGCATCGCGAACCAGGCTGTGCGCATCCAGGAGGGCCGGTACCGCCACCCCGGCTGC
TACACCTGTGCCGACTGTGGGCTGAACCTGAAGATGCGCGGGCACTTCTGGGTGGGTGACGAGCTGTACT
GTGAGAAGCATGCCCGCCAGCGCTACTCCGCACCTGCCACCCTCAGCTCTCGGGCCTGA

Translation (602 aa):
MRGGRARPAWESFMGLPPRSSAKWGAGQSLDRLCCAPGSRGLAGAPGRMRAPPAGRSQPAGGPGDSLPHP
PGGLGPGGSAWARRAEAAASRARGGGRGGPGITWAEAGPGAPGGLSPESGRRQRERWRLPAFPPSRAWAP
SRTGERQPGERAHLRLSARPALPGAGLLSAPLSARNPGLVRGPAPWSLASAGAPPRAALSPAGALLLQPP
ARRVLCPRSEGGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFRITGGRDFHTPIMVT
KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVL
ATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRL
SYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGC
YTCADCGLNLKMRGHFWVGDELYCEKHARQRYSAPATLSSRA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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