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Report for CCDS94536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94536.1 Public Homo sapiens 9 LCN10 24 110 108 CCDS HistoryNCBI Gene:414332Re-query CCDS DB by CCDS ID:94536.1Re-query CCDS DB by GeneID:414332See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94536.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000474369.1 ENSP00000420564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474369.1Link to Ensembl Protein Viewer:ENSP00000420564.1Re-query CCDS DB by Nucleotide ID:ENST00000474369Re-query CCDS DB by Protein ID:ENSP00000420564
Original member Current member NCBI NM_001368089.1 NP_001355018.1 Accepted alive Link to Nucleotide Sequence:NM_001368089.1Link to Protein Sequence:NP_001355018.1Re-query CCDS DB by Nucleotide ID:NM_001368089Re-query CCDS DB by Protein ID:NP_001355018Link to BLAST:NP_001355018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355018.1 187 Q6JVE6-1 187 100% 0 0

Chromosomal Locations for CCDS 94536.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136739525 136739553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136739950 136740048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136740836 136741014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136741881 136742020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136742787 136742903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGAGGCAGGGGCTGCTGGTGCTGGCGCTGGTGCTGGTGCTGGTGCTAGTGCTGGCTGCAGGGTCCCAGG
TGCAGGAGTGGTACCCCAGGGAGTCCCACGCCCTCAACTGGAACAAGTTTTCAGGGTTCTGGTACATTCT
GGCCACTGCCACTGATGCCCAGGGATTCTTGCCGGCCAGGGACAAGAGGAAGCTGGGGGCGTCCGTGGTA
AAGGTGAACAAAGTGGGCCAGCTCCGCGTGCTCCTCGCCTTCAGACGGGGTCAGGGCTGTGGGCGGGCAC
AGCCACGCCATCCGGGAACCAGCGGGCATCTCTGGGCATCTCTTTCAGTGAAAGGGGTGAAGGCCTTCCA
CGTGCTGTCCACTGACTACAGCTACGGCTTGGTCTACCTCCGCCTGGGGCGTGCAACCCAAAACTACAAG
AACCTGCTGCTCTTCCATAGGCAGAATGTTTCGAGCTTCCAGAGTCTGAAGGAATTCATGGACGCTTGTG
ACATTCTGGGGCTCTCCAAGGCCGCCGTCATCCTCCCGAAAGACGCGTCCCGTACACACACCATCCTGCC
ATGA

Translation (187 aa):
MRQGLLVLALVLVLVLVLAAGSQVQEWYPRESHALNWNKFSGFWYILATATDAQGFLPARDKRKLGASVV
KVNKVGQLRVLLAFRRGQGCGRAQPRHPGTSGHLWASLSVKGVKAFHVLSTDYSYGLVYLRLGRATQNYK
NLLLFHRQNVSSFQSLKEFMDACDILGLSKAAVILPKDASRTHTILP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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