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Report for CCDS94537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94537.1 Public Homo sapiens 9 LCN10 24 110 108 CCDS HistoryNCBI Gene:414332Re-query CCDS DB by CCDS ID:94537.1Re-query CCDS DB by GeneID:414332See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527229.5 ENSP00000431726.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527229.5Link to Ensembl Protein Viewer:ENSP00000431726.1Re-query CCDS DB by Nucleotide ID:ENST00000527229Re-query CCDS DB by Protein ID:ENSP00000431726
Original member Current member NCBI NM_001368090.1 NP_001355019.1 Accepted alive Link to Nucleotide Sequence:NM_001368090.1Link to Protein Sequence:NP_001355019.1Re-query CCDS DB by Nucleotide ID:NM_001368090Re-query CCDS DB by Protein ID:NP_001355019Link to BLAST:NP_001355019.1

Chromosomal Locations for CCDS 94537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136739525 136739553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136739950 136740048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136741252 136741361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136741881 136742020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136742787 136742903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGAGGCAGGGGCTGCTGGTGCTGGCGCTGGTGCTGGTGCTGGTGCTAGTGCTGGCTGCAGGGTCCCAGG
TGCAGGAGTGGTACCCCAGGGAGTCCCACGCCCTCAACTGGAACAAGTTTTCAGGGTTCTGGTACATTCT
GGCCACTGCCACTGATGCCCAGGGATTCTTGCCGGCCAGGGACAAGAGGAAGCTGGGGGCGTCCGTGGTA
AAGGTGAACAAAGTGGGCCAGCTCCGCGTGCTCCTCGCCTTCAGACGGTTGAAGGGGTGCCAGTCCCAGG
AGGTGATCCTGAGGAAAGACGGGAAGAAGCCGGTGTTTGGGAACGCCTGTGCATACGCGGCGGGCCCGAG
GGAAGGACAGGAGGGAGATAGGCAGAATGTTTCGAGCTTCCAGAGTCTGAAGGAATTCATGGACGCTTGT
GACATTCTGGGGCTCTCCAAGGCCGCCGTCATCCTCCCGAAAGACGCGTCCCGTACACACACCATCCTGC
CATGA

Translation (164 aa):
MRQGLLVLALVLVLVLVLAAGSQVQEWYPRESHALNWNKFSGFWYILATATDAQGFLPARDKRKLGASVV
KVNKVGQLRVLLAFRRLKGCQSQEVILRKDGKKPVFGNACAYAAGPREGQEGDRQNVSSFQSLKEFMDAC
DILGLSKAAVILPKDASRTHTILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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