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Report for CCDS25993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25993.1 Public Mus musculus 12 Hspa2 23 108 98 CCDS HistoryNCBI Gene:15512Re-query CCDS DB by CCDS ID:25993.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080449.6 ENSMUSP00000079306.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080449.6Link to Ensembl Protein Viewer:ENSMUSP00000079306.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080449Re-query CCDS DB by Protein ID:ENSMUSP00000079306
Original member Current member EBI ENSMUST00000219555.1 ENSMUSP00000151408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219555.1Link to Ensembl Protein Viewer:ENSMUSP00000151408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219555Re-query CCDS DB by Protein ID:ENSMUSP00000151408
Original member NCBI NM_001002012.1 NP_001002012.1 Updated not alive Link to Nucleotide Sequence:NM_001002012.1Link to Protein Sequence:NP_001002012.1Re-query CCDS DB by Nucleotide ID:NM_001002012Re-query CCDS DB by Protein ID:NP_001002012
Current member NCBI NM_001002012.2 NP_001002012.1 Accepted alive Link to Nucleotide Sequence:NM_001002012.2Link to Protein Sequence:NP_001002012.1Re-query CCDS DB by Nucleotide ID:NM_001002012Re-query CCDS DB by Protein ID:NP_001002012Link to BLAST:NP_001002012.1
Original member NCBI NM_008301.4 NP_032327.2 Updated not alive Link to Nucleotide Sequence:NM_008301.4Link to Protein Sequence:NP_032327.2Re-query CCDS DB by Nucleotide ID:NM_008301Re-query CCDS DB by Protein ID:NP_032327
Current member NCBI NM_008301.5 NP_032327.2 Accepted alive Link to Nucleotide Sequence:NM_008301.5Link to Protein Sequence:NP_032327.2Re-query CCDS DB by Nucleotide ID:NM_008301Re-query CCDS DB by Protein ID:NP_032327Link to BLAST:NP_032327.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002012.1 633 P17156 633 100% 0 0
NP_032327.2 633 P17156 633 100% 0 0

Chromosomal Locations for CCDS 25993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76404534 76406435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGTCTGCCCGCGGCCCGGCTATCGGCATCGACCTGGGCACCACTTACTCGTGCGTGGGGGTATTCCAAC
ATGGCAAGGTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACCCCCAGCTACGTGGCCTTCACTGA
CACCGAGCGTCTCATCGGCGACGCCGCCAAGAACCAAGTGGCCATGAACCCCACAAACACCATCTTCGAC
GCCAAGCGGCTGATCGGACGGAAGTTCGAGGACGCCACAGTGCAGTCCGATATGAAGCACTGGCCGTTCC
GAGTGGTGAGCGAAGGTGGGAAGCCCAAAGTGCAGGTGGAATATAAAGGGGAGATGAAGACCTTCTTCCC
TGAGGAGATTTCTTCCATGGTCCTCACTAAGATGAAGGAGATCGCCGAAGCCTACCTGGGGGGCAAGGTG
CAGAGCGCAGTCATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGCCAGGCCACCAAGGATGCGGGCA
CCATCACCGGCCTCAACGTGTTGCGCATCATCAATGAGCCCACAGCAGCGGCCATCGCCTACGGCCTGGA
TAAGAAGGGCTGTGCGGGCGGCGAGAAGAACGTGCTCATCTTTGACCTGGGCGGGGGCACCTTCGATGTG
TCCATCCTGACCATCGAGGATGGCATCTTTGAGGTGAAGTCCACGGCCGGCGATACCCACCTGGGTGGCG
AAGACTTCGACAACCGTATGGTCAGCCACCTGGCGGAGGAGTTCAAGCGCAAACACAAGAAGGACATTGG
GCCCAACAAGCGCGCTGTGCGCCGGCTGCGCACCGCCTGCGAGCGCGCTAAGCGCACCCTGAGCTCGTCC
ACGCAGGCCAGCATAGAGATCGACTCGCTCTACGAGGGCGTGGATTTCTACACGTCCATCACCCGCGCCC
GCTTCGAGGAGCTCAACGCCGATCTCTTCCGAGGGACCCTGGAGCCGGTGGAAAAGGCGCTGCGCGATGC
CAAGCTAGACAAGGGCCAGATCCAGGAGATAGTGCTGGTGGGCGGCTCAACCCGCATCCCTAAGATCCAG
AAGCTCCTGCAAGATTTCTTCAACGGCAAGGAGCTGAACAAGAGCATTAATCCCGACGAGGCGGTGGCCT
ACGGCGCCGCTGTGCAGGCGGCTATCCTCATCGGCGACAAGTCGGAAAATGTGCAGGATCTGCTGTTACT
CGACGTGACTCCATTGTCGCTCGGCATCGAAACAGCTGGCGGTGTCATGACCCCACTCATCAAGAGAAAC
ACCACGATCCCCACCAAGCAGACGCAGACCTTCACTACCTACTCAGACAACCAGAGCAGCGTGCTGGTGC
AAGTGTACGAGGGCGAACGGGCCATGACCAAGGACAATAACCTCTTGGGCAAGTTCGACCTGACTGGGAT
CCCCCCAGCACCCCGTGGGGTCCCCCAGATCGAGGTCACCTTTGACATCGATGCCAACGGCATCCTTAAC
GTCACTGCTGCCGACAAGAGCACCGGTAAAGAAAATAAAATCACCATAACCAACGACAAGGGTCGGCTGA
GCAAAGACGACATTGACCGGATGGTGCAGGAGGCGGAGCGGTACAAATCGGAAGATGAAGCAAATCGCGA
TCGCGTGGCAGCCAAAAATGCGGTGGAGTCCTATACCTACAACATCAAGCAGACCGTGGAAGACGAGAAA
CTGAGGGGCAAGATTAGCGAGCAGGACAAAAACAAGATCCTCGACAAGTGTCAGGAGGTGATCAACTGGC
TTGACCGAAACCAGATGGCAGAGAAAGATGAGTACGAACACAAGCAGAAAGAGCTTGAGAGAGTGTGCAA
CCCCATCATCAGCAAACTTTACCAAGGCGGTCCAGGCGGCGGCGGCTCCTCTGGAGGGCCCACCATCGAG
GAAGTGGACTAG

Translation (633 aa):
MSARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFD
AKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEAYLGGKV
QSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDV
SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSS
TQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQ
KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRN
TTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILN
VTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEK
LRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGSSGGPTIE
EVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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