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Report for CCDS17665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17665.1 Public Mus musculus 3 Hsd3b4 23 108 98 CCDS HistoryNCBI Gene:15495Re-query CCDS DB by CCDS ID:17665.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 17665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179429.5 ENSMUSP00000136588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179429.5Link to Ensembl Protein Viewer:ENSMUSP00000136588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179429Re-query CCDS DB by Protein ID:ENSMUSP00000136588
Original member Current member EBI ENSMUST00000196861.1 ENSMUSP00000142522.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196861.1Link to Ensembl Protein Viewer:ENSMUSP00000142522.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196861Re-query CCDS DB by Protein ID:ENSMUSP00000142522
Original member Current member NCBI NM_001111336.1 NP_001104806.1 Accepted alive Link to Nucleotide Sequence:NM_001111336.1Link to Protein Sequence:NP_001104806.1Re-query CCDS DB by Nucleotide ID:NM_001111336Re-query CCDS DB by Protein ID:NP_001104806Link to BLAST:NP_001104806.1
Original member Current member NCBI NM_008294.2 NP_032320.1 Accepted alive Link to Nucleotide Sequence:NM_008294.2Link to Protein Sequence:NP_032320.1Re-query CCDS DB by Nucleotide ID:NM_008294Re-query CCDS DB by Protein ID:NP_032320Link to BLAST:NP_032320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104806.1 373 Q61767 373 100% 0 0
NP_032320.1 373 Q61767 373 100% 0 0

Chromosomal Locations for CCDS 17665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98499456 98500267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98503760 98503924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98509823 98509967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCCTGGGTGGAGCTGCCTGGTGACAGGAGCAGGAGGGTTTCTTGGCCAGAGGATTGTCCGAATGTTGG
TGCAGGAGGAAGAGCTGCAGGAGATCAGAGCCCTGTTCAGGACCTTCGGTCGAAAACAGGAAGAGGAATT
GTCCAAGCTGCAGACAAAGACCAAGGTGACAGTACTGAAGGGAGACATTCTGGATGCCCAGTGCCTGAAG
AGAGCCTGCCAGGGCATGTCTGCTGTCATCCACACCGCTGCTGCTATTGACCCCCTTGGTGCCGCTTCCA
GACAGACCATCCTAGATGTCAATCTGAAAGGTACTCAGCTCCTACTGGATGCTTGTGTGGAAGCCAACGT
GCCAACATTCATCTACAGCAGCTCAGTGCTTGTGGCTGGACCAAATTCCTACAAGGAGATCATCCTGAAT
GCCCATGAGGAGGAGCATCATGAAAGCACATGGTCTAACCCATACCCATACAGCAAAAAGATGGCTGAGA
AGGCAGTGCTGGCAGCCAATGGGAGCATCCTGAAAAATGGTGGCACTTTGCATACTTGTGCCTTAAGACT
CTCTTTCATCTATGGGGAAGAATGCCAAGTCACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGC
ATAATTAAGAAAAATGCCACATTCTCCATCGCCAACCCAGTGTATGTGGGCAATGCAGCCTGGGCTCACA
TTCTGGCTGCCAGGAGCCTACAGGACCCTAAGAAGTCCCCAAGCATCCAAGGACAGTTCTATTACATTAC
AGATGACACCCCTCACCAAAGCTATGATGACTTAAAATGCACCCTGAGCAAGGAGTGGGGCCTCCGCCTT
GATACCAGCTGGAGTCTTCCTCTGCCCCTGCTCTACTGGCTTGCCTTCCTCCTGGAAACTGTGAGCTTCC
TGCTACGTCCAGTCTACAACTATAGACCACCATTTAACCGCCTCTTGATCACAGTGCTAAATAGTGTATT
CACCTTCTCCTACAAGAAGGCTCAGCGAGATCTGGGCTATGAGCCACTTGTCAGCTGGGAGGAAGCCAAG
CAGAAAACCTCAGAGTGGATCGGAACACTAGTGATGCAGCACAGGGAGATTGGAAACAAAAAGTCACAGT
GA

Translation (373 aa):
MPGWSCLVTGAGGFLGQRIVRMLVQEEELQEIRALFRTFGRKQEEELSKLQTKTKVTVLKGDILDAQCLK
RACQGMSAVIHTAAAIDPLGAASRQTILDVNLKGTQLLLDACVEANVPTFIYSSSVLVAGPNSYKEIILN
AHEEEHHESTWSNPYPYSKKMAEKAVLAANGSILKNGGTLHTCALRLSFIYGEECQVTSTTVKTALKNNS
IIKKNATFSIANPVYVGNAAWAHILAARSLQDPKKSPSIQGQFYYITDDTPHQSYDDLKCTLSKEWGLRL
DTSWSLPLPLLYWLAFLLETVSFLLRPVYNYRPPFNRLLITVLNSVFTFSYKKAQRDLGYEPLVSWEEAK
QKTSEWIGTLVMQHREIGNKKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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