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Report for CCDS43634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43634.1 Public Homo sapiens 7 SAMTOR 24 110 108 CCDS HistoryNCBI Gene:154743Re-query CCDS DB by CCDS ID:43634.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43634.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297145.9 ENSP00000297145.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297145.9Link to Ensembl Protein Viewer:ENSP00000297145.4Re-query CCDS DB by Nucleotide ID:ENST00000297145Re-query CCDS DB by Protein ID:ENSP00000297145
Original member Current member NCBI NM_152556.3 NP_689769.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152556.3Link to Protein Sequence:NP_689769.2Re-query CCDS DB by Nucleotide ID:NM_152556Re-query CCDS DB by Protein ID:NP_689769Link to BLAST:NP_689769.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689769.2 405 Q1RMZ1 405 100% 0 0

Chromosomal Locations for CCDS 43634.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112821744 112822373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112832561 112832675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112895569 112895739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112915306 112915447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112939591 112939750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGAGCCAGGGGCCGGCGGCCGAAATACTGCTCGTGCGCAGAGGGCCGGGTCCCCGAACACTCCGCCGC
CCCGGGAGCAGGAGCGGAAACTGGAGCAGGAGAAGCTCTCCGGTGTGGTGAAGAGCGTCCACCGGCGGCT
CCGCAAGAAGTACCGAGAAGTGGGAGATTTTGATAAGATCTGGCGAGAACACTGTGAGGATGAAGAAACT
CTTTGTGAATATGCCGTTGCAATGAAAAATTTGGCAGATAATCATTGGGCAAAAACTTGTGAGGGCGAAG
GTCGTATTGAATGGTGTTGTAGTGTATGCAGAGAATATTTCCAAAATGGTGGGAAGAGAAAAGCACTTGA
GAAAGATGAAAAAAGAGCTGTACTTGCCACTAAGACCACTCCAGCCTTAAATATGCATGAGTCTTCTCAA
CTTGAAGGTCATTTAACCAACCTCAGCTTTACAAACCCTGAATTTATAACTGAGTTGCTACAAGCCTCAG
GAAAAATCAGATTACTTGATGTTGGCAGCTGCTTTAACCCATTTCTGAAGTTTGAAGAATTTCTAACTGT
TGGCATAGATATTGTACCTGCTGTAGAGAGTGTCTATAAATGTGATTTCCTGAACTTACAGCTTCAGCAA
CCACTCCAGCTTGCACAGGATGCTATAGATGCTTTTTTGAAGCAGCTGAAAAACCCTATTGATTCTCTTC
CTGGAGAGCTTTTCCATGTGGTTGTTTTCTCTCTCCTTCTTTCTTATTTTCCATCTCCTTACCAGCGATG
GATTTGCTGCAAGAAAGCCCATGAACTGTTAGTGTTAAATGGTTTATTACTAATCATCACACCTGATTCC
TCCCATCAGAACCGTCATGCTATGATGATGAAAAGCTGGAAGATTGCTATAGAGTCCCTGGGCTTTAAAC
GCTTCAAGTACTCAAAATTTTCACATATGCATCTGATGGCATTTAGGAAAATCTCTCTAAAAACCACAAG
TGACTTGGTTAGTAGGAACTACCCAGGAATGTTATATATTCCTCAAGATTTCAACAGTATAGAAGATGAG
GAATATTCTAACCCTTCCTGCTATGTTCGATCAGATATAGAAGATGAACAACTAGCATATGGTTTCACAG
AACTCCCTGATGCGCCATATGACTCAGATTCTGGAGAAAGTCAAGCCAGCTCTATTCCTTTCTATGAGCT
AGAAGACCCCATATTACTTTTAAGTTAA

Translation (405 aa):
MEPGAGGRNTARAQRAGSPNTPPPREQERKLEQEKLSGVVKSVHRRLRKKYREVGDFDKIWREHCEDEET
LCEYAVAMKNLADNHWAKTCEGEGRIEWCCSVCREYFQNGGKRKALEKDEKRAVLATKTTPALNMHESSQ
LEGHLTNLSFTNPEFITELLQASGKIRLLDVGSCFNPFLKFEEFLTVGIDIVPAVESVYKCDFLNLQLQQ
PLQLAQDAIDAFLKQLKNPIDSLPGELFHVVVFSLLLSYFPSPYQRWICCKKAHELLVLNGLLLIITPDS
SHQNRHAMMMKSWKIAIESLGFKRFKYSKFSHMHLMAFRKISLKTTSDLVSRNYPGMLYIPQDFNSIEDE
EYSNPSCYVRSDIEDEQLAYGFTELPDAPYDSDSGESQASSIPFYELEDPILLLS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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