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Report for CCDS47037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47037.1 Public Homo sapiens 4 SEL1L3 24 110 108 CCDS HistoryNCBI Gene:23231Re-query CCDS DB by CCDS ID:47037.1Re-query CCDS DB by GeneID:23231See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47037.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399878.8 ENSP00000382767.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399878.8Link to Ensembl Protein Viewer:ENSP00000382767.3Re-query CCDS DB by Nucleotide ID:ENST00000399878Re-query CCDS DB by Protein ID:ENSP00000382767
Original member Current member NCBI NM_015187.5 NP_056002.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015187.5Link to Protein Sequence:NP_056002.2Re-query CCDS DB by Nucleotide ID:NM_015187Re-query CCDS DB by Protein ID:NP_056002Link to BLAST:NP_056002.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056002.2 1132 Q68CR1-1 1132 100% 0 0

Chromosomal Locations for CCDS 47037.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25748425 25748564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25757534 25757606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25757688 25757790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25758941 25759068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25765326 25765435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25767525 25767609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25767740 25767830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25776277 25776360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25779076 25779203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25782242 25782418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25784228 25784290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25788224 25788364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25790455 25790574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25802283 25802462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25804541 25804752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25818138 25818278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25819808 25819940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25821996 25822128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25830098 25830156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25832995 25833110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25833448 25833569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25835197 25835323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25847294 25847864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25862675 25862836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGCAGCGGCGCGGCGCGGGGCTCGGGTGGCCGCGGCAGCAGCAGCAGCAACCCCCGCCGCTCGCGGTCG
GCCCCCGGGCCGCAGCCATGGTCCCGAGTGGCGGCGTCCCCCAGGGCCTCGGCGGCCGCTCTGCCTGCGC
GCTGCTCCTGCTCTGCTACCTGAATGTTGTACCATCTTTGGGTAGGCAGACTTCCCTGACGACATCAGTG
ATACCCAAAGCTGAGCAGAGCGTGGCTTACAAAGACTTTATTTATTTTACTGTCTTTGAAGGAAACGTTC
GCAACGTTTCTGAAGTCTCGGTTGAGTATTTATGCTCTCAGCCTTGTGTTGTCAATTTGGAAGCAGTTGT
TTCATCTGAGTTCAGAAGTAGCATTCCCGTGTACAAAAAAAGGTGGAAGAATGAGAAACATCTTCACACC
AGCAGGACACAAATAGTACATGTGAAATTTCCAAGCATTATGGTTTACAGAGATGATTATTTCATCAGAC
ATTCCATCTCTGTATCTGCAGTGATAGTACGCGCCTGGATTACTCACAAATACAGTGGCAGAGACTGGAA
TGTTAAATGGGAGGAAAACTTGCTCCATGCTGTAGCAAAGAATTATACCCTCCTGCAGACCATCCCGCCT
TTTGAACGCCCTTTCAAAGATCATCAAGTGTGCCTTGAGTGGAACATGGGTTATATTTGGAACCTTCGGG
CAAACAGGATTCCACAGTGTCCTCTGGAAAATGATGTGGTTGCCCTGCTTGGCTTTCCTTATGCCTCCAG
TGGAGAAAACACAGGCATTGTCAAGAAGTTCCCGAGGTTTCGGAACCGAGAGCTGGAGGCCACTCGACGC
CAGAGGATGGATTACCCAGTGTTTACTGTTTCATTGTGGCTTTATTTACTCCATTATTGCAAGGCCAACC
TCTGTGGGATTCTGTACTTTGTTGACTCTAATGAGATGTACGGCACACCTTCTGTATTTCTTACGGAAGA
GGGCTATTTGCATATTCAGATGCATCTTGTCAAAGGGGAAGACCTTGCTGTAAAAACTAAATTCATCATA
CCTTTGAAGGAGTGGTTTCGACTGGATATCTCTTTTAACGGAGGCCAGATAGTAGTAACCACTAGCATTG
GACAGGATTTGAAAAGCTACCACAATCAGACCATTAGCTTCCGGGAGGATTTCCATTATAATGACACAGC
TGGGTACTTCATTATTGGAGGGAGCAGGTATGTGGCTGGCATTGAAGGGTTTTTTGGACCCCTGAAGTAC
TATCGCCTTCGCAGTCTGCACCCCGCCCAGATTTTTAATCCCCTCCTTGAGAAGCAACTTGCTGAACAAA
TCAAGTTATATTATGAAAGGTGTGCTGAGGTTCAAGAAATAGTATCTGTGTATGCATCTGCAGCAAAGCA
CGGGGGCGAGAGACAAGAAGCATGCCACCTCCACAACTCCTACCTGGACCTCCAGCGCAGGTATGGGAGA
CCCTCGATGTGCAGAGCCTTCCCCTGGGAGAAGGAGCTGAAAGACAAACACCCCAGCTTGTTCCAGGCAT
TGCTGGAGATGGATCTGCTGACCGTGCCAAGGAACCAAAATGAATCTGTATCAGAAATCGGTGGGAAGAT
ATTTGAGAAGGCTGTAAAGAGACTCTCTAGCATTGATGGTCTTCACCAAATTAGCTCTATCGTCCCCTTT
CTGACGGATTCCAGCTGCTGTGGATACCATAAAGCATCCTACTACCTTGCAGTCTTTTATGAGACTGGAT
TAAATGTTCCTCGGGATCAGCTGCAGGGCATGTTGTATAGTTTGGTTGGAGGCCAGGGGAGTGAGAGGCT
GTCTTCAATGAATCTTGGGTATAAACACTACCAGGGTATTGACAACTACCCCCTGGACTGGGAACTGTCG
TATGCCTACTACAGCAACATTGCCACCAAGACACCCCTTGACCAGCACACACTGCAAGGAGATCAGGCAT
ATGTTGAAACAATTAGACTAAAAGATGATGAAATACTCAAGGTACAAACCAAAGAAGATGGAGATGTCTT
TATGTGGTTGAAGCATGAAGCTACCCGAGGCAATGCAGCAGCTCAGCAACGATTGGCCCAGATGCTGTTC
TGGGGGCAGCAAGGTGTGGCCAAGAATCCCGAAGCAGCAATTGAGTGGTACGCCAAGGGCGCCCTGGAGA
CGGAGGATCCTGCGTTAATCTATGACTATGCCATTGTGCTATTCAAGGGTCAAGGAGTAAAAAAGAACAG
ACGGCTTGCCTTAGAGCTGATGAAGAAAGCAGCTTCCAAGGGATTGCATCAGGCAGTCAATGGCCTGGGA
TGGTATTACCACAAATTCAAGAAAAATTACGCCAAAGCAGCAAAGTACTGGTTAAAAGCAGAAGAAATGG
GGAACCCAGATGCGTCATACAATCTTGGAGTCCTGCATTTGGATGGCATCTTCCCTGGAGTTCCTGGAAG
GAATCAAACTTTAGCTGGTGAATATTTCCATAAGGCTGCGCAAGGTGGACACATGGAAGGGACCTTGTGG
TGTTCTCTCTACTATATCACAGGCAACCTGGAGACATTCCCTAGAGATCCTGAGAAAGCTGTTGTATGGG
CAAAACATGTAGCTGAGAAAAATGGCTACTTGGGCCATGTCATCCGCAAAGGCCTCAATGCCTACCTGGA
AGGTTCATGGCATGAAGCTTTGCTGTATTATGTTTTAGCAGCAGAAACTGGAATTGAAGTGTCACAGACA
AATTTAGCACACATCTGTGAGGAGAGGCCAGACCTGGCCAGGAGATACTTGGGTGTTAACTGTGTTTGGA
GATACTATAATTTCTCTGTTTTTCAAATCGATGCTCCTTCCTTTGCATATTTGAAGATGGGAGACCTTTA
CTACTATGGCCACCAAAACCAGTCACAAGACCTGGAGTTGTCTGTGCAGATGTACGCCCAAGCCGCCCTG
GATGGAGACTCCCAGGGATTTTTTAACCTGGCCCTGCTAATCGAGGAAGGTACGATAATCCCACACCATA
TCTTGGATTTCTTGGAAATTGACTCAACTCTCCATTCTAATAACATCTCCATTCTCCAGGAACTGTACGA
AAGGTGCTGGAGCCACAGTAACGAGGAGTCCTTCAGCCCCTGCTCCTTGGCCTGGCTTTACCTGCACTTG
CGGCTTCTCTGGGGTGCTATCCTGCACTCAGCCCTGATCTACTTTCTGGGAACCTTTCTGCTATCCATAT
TGATCGCCTGGACTGTGCAGTATTTCCAGTCTGTCTCAGCAAGCGATCCCCCTCCAAGACCATCCCAGGC
CTCCCCAGACACTGCCACGTCCACTGCAAGTCCAGCTGTGACTCCAGCTGCAGATGCCTCTGACCAAGAC
CAGCCCACAGTAACTAATAACCCGGAGCCACGTGGGTGA

Translation (1132 aa):
MQRRGAGLGWPRQQQQQPPPLAVGPRAAAMVPSGGVPQGLGGRSACALLLLCYLNVVPSLGRQTSLTTSV
IPKAEQSVAYKDFIYFTVFEGNVRNVSEVSVEYLCSQPCVVNLEAVVSSEFRSSIPVYKKRWKNEKHLHT
SRTQIVHVKFPSIMVYRDDYFIRHSISVSAVIVRAWITHKYSGRDWNVKWEENLLHAVAKNYTLLQTIPP
FERPFKDHQVCLEWNMGYIWNLRANRIPQCPLENDVVALLGFPYASSGENTGIVKKFPRFRNRELEATRR
QRMDYPVFTVSLWLYLLHYCKANLCGILYFVDSNEMYGTPSVFLTEEGYLHIQMHLVKGEDLAVKTKFII
PLKEWFRLDISFNGGQIVVTTSIGQDLKSYHNQTISFREDFHYNDTAGYFIIGGSRYVAGIEGFFGPLKY
YRLRSLHPAQIFNPLLEKQLAEQIKLYYERCAEVQEIVSVYASAAKHGGERQEACHLHNSYLDLQRRYGR
PSMCRAFPWEKELKDKHPSLFQALLEMDLLTVPRNQNESVSEIGGKIFEKAVKRLSSIDGLHQISSIVPF
LTDSSCCGYHKASYYLAVFYETGLNVPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGIDNYPLDWELS
YAYYSNIATKTPLDQHTLQGDQAYVETIRLKDDEILKVQTKEDGDVFMWLKHEATRGNAAAQQRLAQMLF
WGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKGQGVKKNRRLALELMKKAASKGLHQAVNGLG
WYYHKFKKNYAKAAKYWLKAEEMGNPDASYNLGVLHLDGIFPGVPGRNQTLAGEYFHKAAQGGHMEGTLW
CSLYYITGNLETFPRDPEKAVVWAKHVAEKNGYLGHVIRKGLNAYLEGSWHEALLYYVLAAETGIEVSQT
NLAHICEERPDLARRYLGVNCVWRYYNFSVFQIDAPSFAYLKMGDLYYYGHQNQSQDLELSVQMYAQAAL
DGDSQGFFNLALLIEEGTIIPHHILDFLEIDSTLHSNNISILQELYERCWSHSNEESFSPCSLAWLYLHL
RLLWGAILHSALIYFLGTFLLSILIAWTVQYFQSVSASDPPPRPSQASPDTATSTASPAVTPAADASDQD
QPTVTNNPEPRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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