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Report for CCDS10979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10979.1 Public Homo sapiens 16 RPL13 24 110 108 CCDS HistoryNCBI Gene:6137Re-query CCDS DB by CCDS ID:10979.1Re-query CCDS DB by GeneID:6137See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311528.10 ENSP00000307889.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311528.10Link to Ensembl Protein Viewer:ENSP00000307889.5Re-query CCDS DB by Nucleotide ID:ENST00000311528Re-query CCDS DB by Protein ID:ENSP00000307889
Original member Current member EBI ENST00000393099.3 ENSP00000376811.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393099.3Link to Ensembl Protein Viewer:ENSP00000376811.3Re-query CCDS DB by Nucleotide ID:ENST00000393099Re-query CCDS DB by Protein ID:ENSP00000376811
Original member Current member EBI ENST00000567815.5 ENSP00000455009.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567815.5Link to Ensembl Protein Viewer:ENSP00000455009.1Re-query CCDS DB by Nucleotide ID:ENST00000567815Re-query CCDS DB by Protein ID:ENSP00000455009
Original member Current member NCBI NM_000977.4 NP_000968.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000977.4Link to Protein Sequence:NP_000968.2Re-query CCDS DB by Nucleotide ID:NM_000977Re-query CCDS DB by Protein ID:NP_000968Link to BLAST:NP_000968.2
Original member Current member NCBI NM_033251.2 NP_150254.1 Accepted alive Link to Nucleotide Sequence:NM_033251.2Link to Protein Sequence:NP_150254.1Re-query CCDS DB by Nucleotide ID:NM_033251Re-query CCDS DB by Protein ID:NP_150254Link to BLAST:NP_150254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000968.2 211 P26373-1 211 100% 0 0
NP_150254.1 211 P26373-1 211 100% 0 0

Chromosomal Locations for CCDS 10979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89560960 89561063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89561227 89561368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89561578 89561751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89562335 89562391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89562884 89563042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCGCCCAGCCGGAATGGCATGGTCTTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCA
CGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGACGTAAGGCCCGGCAAGCCAAGGCGCGCCGCATCGC
CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCCCACGGTTCGGTACCACACGAAGGTG
CGCGCCGGCCGCGGCTTCAGCCTGGAGGAGCTCAGGGTGGCCGGCATTCACAAGAAGGTGGCCCGGACCA
TCGGCATTTCTGTGGATCCGAGGAGGCGGAACAAGTCCACGGAGTCCCTGCAGGCCAACGTGCAGCGGCT
GAAGGAGTACCGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCT
GCTGAAGAACTGAAACTGGCCACCCAGCTGACCGGACCGGTCATGCCCGTCCGGAACGTCTATAAGAAGG
AGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGTATGGCCCGTGC
CAACGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAA
AAATAA

Translation (211 aa):
MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKV
RAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSS
AEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVEKK
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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