NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27893.1 Public Mus musculus 15 Hoxc9 23 108 98 CCDS HistoryNCBI Gene:15427Re-query CCDS DB by CCDS ID:27893.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001706.6 ENSMUSP00000001706.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001706.6Link to Ensembl Protein Viewer:ENSMUSP00000001706.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001706Re-query CCDS DB by Protein ID:ENSMUSP00000001706
Original member Current member NCBI NM_008272.3 NP_032298.1 Accepted alive Link to Nucleotide Sequence:NM_008272.3Link to Protein Sequence:NP_032298.1Re-query CCDS DB by Nucleotide ID:NM_008272Re-query CCDS DB by Protein ID:NP_032298Link to BLAST:NP_032298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032298.1 260 P09633 260 100% 0 0

Chromosomal Locations for CCDS 27893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102981653 102982190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102983895 102984139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGTCGGCGACGGGGCCCATCAGTAACTATTACGTGGACTCGCTCATCTCTCACGACAATGAAGACCTCC
TAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGACTG
TAGCGATTTTCCGTCCTGTAGCTTCGCGCCCAAGCCGGCTGTATTCAGTACGTCGTGGGCGCCGGTGCCC
TCGCAGTCGTCTGTGGTCTATCACCCTTACGGCCCCCAGCCCCACCTCGGCGCCGACACGCGCTACATGC
GGACTTGGCTCGAGCCGCTGTCCGGCGCCGTCTCCTTCCCCAGCTTCCCGGCCGGGGGCCGTCACTACGC
CCTCAAGCCCGACGCCTACCCGGGGCGCCGCGCCGACTGCGGCCCGGGCGACGGCCGCAGCTACCCGGAC
TACATGTACGGCTCGCCCGGGGAACTGCGCGACCGCGCCCCGCAGACGCTGCCCTCGCCCGAGGCGGACG
CGCTGGCCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCTGGACCCTAGCAACCCCGTGGCCAACTGGAT
CCACGCCCGTTCCACAAGGAAGAAGCGCTGCCCCTACACCAAGTACCAGACGCTGGAACTGGAGAAGGAG
TTTCTCTTCAATATGTATTTAACCAGGGACCGTCGGTACGAGGTGGCCCGTGTTCTCAATCTCACTGAGC
GGCAGGTCAAAATCTGGTTTCAGAACCGGAGGATGAAGATGAAAAAGATGAATAAAGAGAAAACCGACAA
GGAACAATCCTAA

Translation (260 aa):
MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAPVP
SQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGDGRSYPD
YMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKE
FLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH