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Report for CCDS20145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20145.1 Public Mus musculus 6 Hoxa7 23 108 98 CCDS HistoryNCBI Gene:15404Re-query CCDS DB by CCDS ID:20145.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048715.8 ENSMUSP00000048648.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048715.8Link to Ensembl Protein Viewer:ENSMUSP00000048648.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048715Re-query CCDS DB by Protein ID:ENSMUSP00000048648
Original member NCBI NM_010455.2 NP_034585.1 Updated not alive Link to Nucleotide Sequence:NM_010455.2Link to Protein Sequence:NP_034585.1Re-query CCDS DB by Nucleotide ID:NM_010455Re-query CCDS DB by Protein ID:NP_034585
Current member NCBI NM_010455.3 NP_034585.1 Accepted alive Link to Nucleotide Sequence:NM_010455.3Link to Protein Sequence:NP_034585.1Re-query CCDS DB by Nucleotide ID:NM_010455Re-query CCDS DB by Protein ID:NP_034585Link to BLAST:NP_034585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034585.1 229 P02830 229 100% 0 0

Chromosomal Locations for CCDS 20145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52215717 52216030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52217030 52217405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGAGTTCTTCGTATTATGTGAACGCGCTTTTTAGCAAATATACGGCGGGGGCTTCTCTCTTCCAAAATG
CCGAGCCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCGGCTACGGGCCGGGCGCCGGCGCCTT
CGCCTCCACTGTGCCGGGCTTATACAATGTCAACAGCCCCCTCTATCAGAGCCCCTTCGCGTCCGGCTAT
GGCCTGGGAGCCGACGCCTACAACCTGCCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTCTGCAGTG
ACCTCGCCAAAGGCGCCTGCGACAAGGCGGACGAGGGCGTGCTTCACGGCCCGGCCGAAGCCAGTTTCCG
CATCTACCCCTGGATGCGCAGTTCAGGACCCGACAGGAAGCGGGGACGCCAGACCTACACGCGCTACCAG
ACGCTGGAACTGGAGAAGGAATTCCATTTCAACCGCTACCTGACGCGGCGCCGCCGCATCGAGATCGCTC
ACGCGCTCTGCCTCACTGAGCGCCAGATCAAGATCTGGTTCCAGAATCGGCGCATGAAGTGGAAGAAAGA
GCATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCGTTTCCACAGCTGCT
GACAAGGCGGACGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAGGAGGAAGAGGAGTAA

Translation (229 aa):
MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGPGAGAFASTVPGLYNVNSPLYQSPFASGY
GLGADAYNLPCASYDQNIPGLCSDLAKGACDKADEGVLHGPAEASFRIYPWMRSSGPDRKRGRQTYTRYQ
TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDESQAPTAAPEDAVPSVSTAA
DKADEEEEEEEEEEEEEEE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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