NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53256.1 Public Homo sapiens 1 PLEKHN1 24 110 108 CCDS HistoryNCBI Gene:84069Re-query CCDS DB by CCDS ID:53256.1Re-query CCDS DB by GeneID:84069See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379407.7 ENSP00000368717.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379407.7Link to Ensembl Protein Viewer:ENSP00000368717.2Re-query CCDS DB by Nucleotide ID:ENST00000379407Re-query CCDS DB by Protein ID:ENSP00000368717
Original member Current member NCBI NM_001160184.2 NP_001153656.1 Accepted alive Link to Nucleotide Sequence:NM_001160184.2Link to Protein Sequence:NP_001153656.1Re-query CCDS DB by Nucleotide ID:NM_001160184Re-query CCDS DB by Protein ID:NP_001153656Link to BLAST:NP_001153656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153656.1 576 Q494U1-3 576 100% 0 0

Chromosomal Locations for CCDS 53256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 966532 966614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 966704 966803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970277 970423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970521 970601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970686 970758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970879 971006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 971077 971208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 971324 971404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972075 972150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972288 972424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972861 973010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973500 973640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973833 974051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 974316 974364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 974442 974575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGGGAACAGCCACTGTGTCCCTCAGGCCCCCAGGAGGCTCCGGGCCTCCTTCTCCAGAAAGCCCTCGC
TGAAGGGAAACAGAGAGGACAGCGCGCGGATGTCGGCCGGCCTGCCGGGCCCCGAGGCTGCTCGAAGCGG
GGACGCCGCCGCCAACAAGCTCTTCCACTACATCCCGGGCACGGACATCCTGGACCTGGAGAACCAGCGA
GAAAACCTGGAGCAGCCATTCCTGAGTGTGTTCAAGAAGGGGCGGCGGAGGGTGCCTGTGAGGAACCTGG
GAAAAGTTGTGCATTACGCCAAGGTCCAGCTGCGGTTCCAGCACAGCCAGGATGTCAGCGACTGCTACCT
GGAGCTATTCCCCGCCCACCTGTACTTCCAGGCCCACGGCTCGGAAGGACTCACATTTCAGGGGCTGTTA
CCGCTGACGGAGCTGAGTGTCTGCCCGCTCGAGGGGTCCCGAGAGCACGCCTTCCAGATCACAGGCCCAC
TGCCCGCACCCCTCCTGGTGCTCTGCCCCAGCCGGGCCGAGCTGGACCGCTGGCTTTACCACCTGGAGAA
GCAGACGGCCCTCCTCGGGGGGCCGCGGCGCTGCCACTCGGCACCCCCACAGGGGTCCTGCGGAGACGAA
CTCCCCTGGACTTTGCAGCGCCGTCTAACCCGGCTGCGGACGGCGTCAGGGCACGAACCCGGCGGCAGTG
CTGTCTGTGCCTCGAGGGTCAAGCTGCAGCACCTGCCCGCACAGGAGCAGTGGGACCGGCTCTTGGTCCT
GTACCCAACGTCCTTGGCCATTTTCTCCGAGGAGCTGGACGGGCTTTGCTTCAAGGGGGAGCTCCCACTC
CGTGCCGTCCACATCAACCTGGAGGAGAAGGAGAAGCAGATCCGCTCCTTCCTGATTGAAGGCCCCCTCA
TCAACACCATCCGCGTGGTGTGCGCCAGCTACGAGGACTACGGTCACTGGCTGCTGTGCCTTCGCGCTGT
CACCCACAGGGAGGGGGCCCCGCCGCTGCCTGGTGCCGAGAGCTTCCCAGGGTCGCAGGTTATGGGCAGT
GGCCGAGGCTCACTCTCCTCAGGCGGACAGACCAGCTGGGACTCGGGGTGCTTGGCGCCCCCCTCCACCC
GCACCAGCCACTCCCTGCCTGAGTCCTCAGTGCCATCCACCGTGGGCTGCTCCTCCCAGCACACACCGCT
GCACAGGCTGAGCCTGGAGAGCAGCCCAGATGCCCCTGACCACACTTCGGAAACATCACACTCGCCCCTC
TATGCCGACCCCTACACACCACCCGCCACCTCCCACCGCAGGGTCACAGATGTCCGGGGCCTGGAGGAGT
TCCTCAGTGCCATGCAGAGTGCACGTGGACCCACGCCCTCGAGCCCACTCCCCTCGGTGCCTGTGTCTGT
GCCTGCCTCTGACCCTCGCTCCTGCTCCTCCGGCCCCGCTGGCCCCTACTTGCTCTCCAAGAAGGGAGCC
CTGCAGTCCAGAGCCGCTCAGAGACACCGGGGCTCAGCCAAGGATGGGGGGCCGCAGCCCCCAGACGCCC
CTCAGCTTGTCTCCTCTGCCAGGGAAGGTTCGCCCGAACCCTGGCTGCCTCTGACAGATGGTCGGTCCCC
CAGGAGGAGCCGGGACCCCGGCTACGACCACCTCTGGGACGAGACTTTGTCTTCCTCCCACCAGAAGTGC
CCCCAGCTTGGAGGGCCTGAGGCCAGTGGGGGGCTTGTGCAGTGGATCTGA

Translation (576 aa):
MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPGTDILDLENQR
ENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELFPAHLYFQAHGSEGLTFQGLL
PLTELSVCPLEGSREHAFQITGPLPAPLLVLCPSRAELDRWLYHLEKQTALLGGPRRCHSAPPQGSCGDE
LPWTLQRRLTRLRTASGHEPGGSAVCASRVKLQHLPAQEQWDRLLVLYPTSLAIFSEELDGLCFKGELPL
RAVHINLEEKEKQIRSFLIEGPLINTIRVVCASYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGS
GRGSLSSGGQTSWDSGCLAPPSTRTSHSLPESSVPSTVGCSSQHTPLHRLSLESSPDAPDHTSETSHSPL
YADPYTPPATSHRRVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGA
LQSRAAQRHRGSAKDGGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSRDPGYDHLWDETLSSSHQKC
PQLGGPEASGGLVQWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH