NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47912.1 Public Homo sapiens 8 SYBU 24 110 108 CCDS HistoryNCBI Gene:55638Re-query CCDS DB by CCDS ID:47912.1Re-query CCDS DB by GeneID:55638See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276646.14 ENSP00000276646.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276646.14Link to Ensembl Protein Viewer:ENSP00000276646.9Re-query CCDS DB by Nucleotide ID:ENST00000276646Re-query CCDS DB by Protein ID:ENSP00000276646
Original member Current member EBI ENST00000408908.6 ENSP00000386154.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000408908.6Link to Ensembl Protein Viewer:ENSP00000386154.2Re-query CCDS DB by Nucleotide ID:ENST00000408908Re-query CCDS DB by Protein ID:ENSP00000386154
Original member Current member EBI ENST00000433638.1 ENSP00000403544.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433638.1Link to Ensembl Protein Viewer:ENSP00000403544.1Re-query CCDS DB by Nucleotide ID:ENST00000433638Re-query CCDS DB by Protein ID:ENSP00000403544
Original member Current member EBI ENST00000440310.5 ENSP00000404369.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440310.5Link to Ensembl Protein Viewer:ENSP00000404369.1Re-query CCDS DB by Nucleotide ID:ENST00000440310Re-query CCDS DB by Protein ID:ENSP00000404369
Original member Current member EBI ENST00000422135.5 ENSP00000407118.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422135.5Link to Ensembl Protein Viewer:ENSP00000407118.1Re-query CCDS DB by Nucleotide ID:ENST00000422135Re-query CCDS DB by Protein ID:ENSP00000407118
Original member Current member EBI ENST00000533171.5 ENSP00000434679.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533171.5Link to Ensembl Protein Viewer:ENSP00000434679.1Re-query CCDS DB by Nucleotide ID:ENST00000533171Re-query CCDS DB by Protein ID:ENSP00000434679
Original member Current member NCBI NM_001099744.2 NP_001093214.1 Accepted alive Link to Nucleotide Sequence:NM_001099744.2Link to Protein Sequence:NP_001093214.1Re-query CCDS DB by Nucleotide ID:NM_001099744Re-query CCDS DB by Protein ID:NP_001093214Link to BLAST:NP_001093214.1
Original member Current member NCBI NM_001099745.2 NP_001093215.1 Accepted alive Link to Nucleotide Sequence:NM_001099745.2Link to Protein Sequence:NP_001093215.1Re-query CCDS DB by Nucleotide ID:NM_001099745Re-query CCDS DB by Protein ID:NP_001093215Link to BLAST:NP_001093215.1
Original member Current member NCBI NM_001099748.2 NP_001093218.1 Accepted alive Link to Nucleotide Sequence:NM_001099748.2Link to Protein Sequence:NP_001093218.1Re-query CCDS DB by Nucleotide ID:NM_001099748Re-query CCDS DB by Protein ID:NP_001093218Link to BLAST:NP_001093218.1
Original member Current member NCBI NM_001099750.2 NP_001093220.1 Accepted alive Link to Nucleotide Sequence:NM_001099750.2Link to Protein Sequence:NP_001093220.1Re-query CCDS DB by Nucleotide ID:NM_001099750Re-query CCDS DB by Protein ID:NP_001093220Link to BLAST:NP_001093220.1
Original member Current member NCBI NM_001099752.2 NP_001093222.1 Accepted alive Link to Nucleotide Sequence:NM_001099752.2Link to Protein Sequence:NP_001093222.1Re-query CCDS DB by Nucleotide ID:NM_001099752Re-query CCDS DB by Protein ID:NP_001093222Link to BLAST:NP_001093222.1
Original member Current member NCBI NM_001099754.2 NP_001093224.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099754.2Link to Protein Sequence:NP_001093224.1Re-query CCDS DB by Nucleotide ID:NM_001099754Re-query CCDS DB by Protein ID:NP_001093224Link to BLAST:NP_001093224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093214.1 663 Q9NX95-1 663 100% 0 0
NP_001093215.1 663 Q9NX95-1 663 100% 0 0
NP_001093218.1 663 Q9NX95-1 663 100% 0 0
NP_001093220.1 663 Q9NX95-1 663 100% 0 0
NP_001093222.1 663 Q9NX95-1 663 100% 0 0
NP_001093224.1 663 Q9NX95-1 663 100% 0 0

Chromosomal Locations for CCDS 47912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109574906 109576013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109577868 109578017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109579799 109580002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109586060 109586162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109618842 109619039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109642728 109642932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109644636 109644659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGGGCCCCTCCGCGAGAGCAAGAAGGAGCACAGAGTGCAGCATCATGACAAGGAGATTTCTCGAAGCC
GAATTCCCCGGTTGATTCTTCGGCCCCATATGCCCCAACAACAGCACAAAGTGTCCCCAGCCTCTGAGTC
TCCTTTCTCTGAGGAAGAGAGCAGAGAGTTCAACCCCAGCAGCTCTGGGCGCTCAGCGAGGACCGTTAGC
AGCAACAGCTTCTGCTCAGATGACACAGGCTGTCCTAGCAGCCAGTCAGTGTCTCCTGTGAAGACACCCT
CAGATGCTGGAAACAGCCCCATTGGCTTTTGCCCTGGAAGTGATGAAGGCTTCACCAGAAAGAAATGCAC
GATTGGAATGGTTGGTGAAGGAAGCATTCAGTCCTCTCGATATAAGAAGGAATCAAAGTCAGGCCTTGTG
AAACCAGGTAGTGAAGCTGATTTTAGCTCCTCGAGCAGCACAGGCAGCATTTCCGCTCCTGAGGTCCATA
TGTCGACTGCGGGAAGCAAGCGGTCTTCTTCTTCACGCAATCGAGGTCCTCATGGGCGGAGTAATGGAGC
TTCGTCACACAAGCCTGGCAGCAGCCCATCATCCCCGCGGGAAAAGGACCTTCTGTCCATGCTGTGCAGG
AATCAGCTGAGCCCTGTCAATATCCATCCCAGTTATGCACCTTCTTCCCCAAGCAGTAGCAACTCAGGCT
CCTACAAAGGAAGCGACTGTAGCCCCATCATGAGGCGTTCTGGAAGGTACATGTCTTGCGGTGAAAATCA
TGGTGTCAGACCCCCAAACCCAGAGCAGTATTTGACTCCACTGCAGCAGAAAGAGGTGACAGTGAGACAC
CTCAAAACCAAGCTGAAGGAATCTGAGCGCCGACTCCATGAAAGGGAAAGTGAAATCGTGGAGCTTAAGT
CCCAGCTGGCCCGCATGCGAGAGGACTGGATTGAGGAGGAGTGTCACCGGGTAGAGGCCCAGTTGGCACT
CAAAGAAGCCAGGAAAGAGATTAAACAGCTCAAACAGGTCATCGAAACCATGCGGAGCAGCTTGGCTGAT
AAAGATAAAGGCATTCAGAAATATTTTGTGGACATAAACATCCAAAACAAGAAGCTGGAGTCTCTCCTTC
AGAGCATGGAGATGGCACACAGTGGCTCTCTGAGGGACGAACTGTGCCTAGACTTTCCATGTGATTCCCC
AGAGAAGAGCTTAACCCTCAACCCCCCTCTTGACACAATGGCAGATGGGTTATCTCTGGAAGAGCAGGTC
ACGGGGGAAGGGGCTGACAGGGAGCTACTGGTAGGAGATAGCATAGCCAACAGCACAGATTTGTTCGATG
AGATAGTGACAGCCACCACCACAGAATCTGGTGACCTGGAGCTTGTGCATTCCACCCCTGGGGCTAACGT
CCTGGAGCTGCTGCCCATAGTCATGGGTCAGGAGGAGGGCAGTGTGGTGGTGGAGCGAGCCGTTCAGACC
GACGTGGTGCCCTACAGCCCAGCCATCTCAGAGCTCATTCAGAGTGTGCTGCAGAAGCTCCAGGACCCCT
GTCCCTCGAGCTTGGCGTCCCCTGATGAGTCTGAACCAGACTCGATGGAGAGCTTCCCAGAGTCCCTCTC
TGCCTTAGTGGTTGATTTAACTCCAAGAAATCCAAACTCAGCCATCCTTTTGTCTCCCGTGGAGACCCCC
TACGCCAATGTGGATGCAGAAGTTCATGCAAACCGCCTCATGAGAGAGCTGGATTTTGCAGCCTGCGTGG
AAGAGAGGTTGGATGGTGTCATCCCACTGGCTCGCGGGGGCGTCGTGAGGCAGTACTGGAGCAGCAGCTT
CCTGGTGGATCTCCTGGCTGTGGCTGCCCCCGTGGTCCCCACGGTTCTGTGGGCATTCAGTACTCAGAGA
GGGGGAACGGATCCTGTGTATAACATCGGGGCCTTGCTCAGGGGCTGTTGCGTGGTTGCCCTGCATTCGC
TCCGCCGCACCGCCTTCCGTATCAAAACCTAA

Translation (663 aa):
MGPLRESKKEHRVQHHDKEISRSRIPRLILRPHMPQQQHKVSPASESPFSEEESREFNPSSSGRSARTVS
SNSFCSDDTGCPSSQSVSPVKTPSDAGNSPIGFCPGSDEGFTRKKCTIGMVGEGSIQSSRYKKESKSGLV
KPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSSRNRGPHGRSNGASSHKPGSSPSSPREKDLLSMLCR
NQLSPVNIHPSYAPSSPSSSNSGSYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRH
LKTKLKESERRLHERESEIVELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAD
KDKGIQKYFVDINIQNKKLESLLQSMEMAHSGSLRDELCLDFPCDSPEKSLTLNPPLDTMADGLSLEEQV
TGEGADRELLVGDSIANSTDLFDEIVTATTTESGDLELVHSTPGANVLELLPIVMGQEEGSVVVERAVQT
DVVPYSPAISELIQSVLQKLQDPCPSSLASPDESEPDSMESFPESLSALVVDLTPRNPNSAILLSPVETP
YANVDAEVHANRLMRELDFAACVEERLDGVIPLARGGVVRQYWSSSFLVDLLAVAAPVVPTVLWAFSTQR
GGTDPVYNIGALLRGCCVVALHSLRRTAFRIKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH