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Report for CCDS33979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33979.1 Public Homo sapiens 4 SHISA3 24 110 108 CCDS HistoryNCBI Gene:152573Re-query CCDS DB by CCDS ID:33979.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319234.5 ENSP00000326445.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319234.5Link to Ensembl Protein Viewer:ENSP00000326445.4Re-query CCDS DB by Nucleotide ID:ENST00000319234Re-query CCDS DB by Protein ID:ENSP00000326445
Original member Current member NCBI NM_001080505.3 NP_001073974.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080505.3Link to Protein Sequence:NP_001073974.1Re-query CCDS DB by Nucleotide ID:NM_001080505Re-query CCDS DB by Protein ID:NP_001073974Link to BLAST:NP_001073974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073974.1 238 A0PJX4 238 100% 0 0

Chromosomal Locations for CCDS 33979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42398057 42398333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42401012 42401451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGAGGGCACTGCTGGCGCTTTGCCTTCTCCTTGGCTGGCTGCGCTGGGGCCCGGCGGGCGCCCAGCAGT
CCGGAGAGTACTGCCACGGCTGGGTGGACGTGCAGGGCAACTACCACGAGGGCTTCCAGTGCCCAGAGGA
CTTCGACACGCTGGACGCTACCATCTGCTGCGGCTCCTGCGCGCTCCGCTACTGTTGCGCCGCGGCCGAC
GCCAGGCTGGAGCAGGGCGGCTGCACCAACGACCGCCGCGAACTGGAGCACCCAGGCATCACTGCGCAGC
CTGTCTACGTCCCCTTTCTCATCGTCGGCTCCATCTTCATTGCGTTCATCATCCTGGGCTCTGTAGTGGC
TATTTATTGTTGCACCTGTTTGAGACCCAAGGAGCCCTCGCAGCAGCCAATCCGCTTCTCACTCCGCAGC
TATCAGACAGAGACCCTGCCCATGATCCTGACCTCCACCAGCCCCAGGGCACCCTCCCGGCAGTCCAGCA
CAGCCACGAGCTCCAGCTCCACAGGCGGCTCCATCCGCAGGTTCTCCTTTGCCAGGGCTGAGCCGGGCTG
CCTGGTGCCCTCACCGCCCCCGCCATACACCACCAGCCACTCAATCCACCTGGCTCAGCCATCTGGTTTC
CTGGTGTCACCCCAGTATTTCGCTTACCCCCTCCAGCAGGAGCCCCCACTGCCTGGGAAGAGCTGTCCAG
ACTTCAGTTCCAGTTGA

Translation (238 aa):
MRALLALCLLLGWLRWGPAGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAAD
ARLEQGGCTNDRRELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEPSQQPIRFSLRS
YQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAEPGCLVPSPPPPYTTSHSIHLAQPSGF
LVSPQYFAYPLQQEPPLPGKSCPDFSSS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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