NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28098.1 Public Mus musculus 16 Hes1 23 108 98 CCDS HistoryNCBI Gene:15205Re-query CCDS DB by CCDS ID:28098.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023171.7 ENSMUSP00000023171.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023171.7Link to Ensembl Protein Viewer:ENSMUSP00000023171.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023171Re-query CCDS DB by Protein ID:ENSMUSP00000023171
Original member NCBI NM_008235.2 NP_032261.1 Updated not alive Link to Nucleotide Sequence:NM_008235.2Link to Protein Sequence:NP_032261.1Re-query CCDS DB by Nucleotide ID:NM_008235Re-query CCDS DB by Protein ID:NP_032261
Current member NCBI NM_008235.3 NP_032261.1 Accepted alive Link to Nucleotide Sequence:NM_008235.3Link to Protein Sequence:NP_032261.1Re-query CCDS DB by Nucleotide ID:NM_008235Re-query CCDS DB by Protein ID:NP_032261Link to BLAST:NP_032261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032261.1 282 P35428 282 100% 0 0

Chromosomal Locations for CCDS 28098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30065591 30065698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30065831 30065926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30066163 30066250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30066872 30067428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGCCAGCTGATATAATGGAGAAAAATTCCTCCTCCCCGGTGGCTGCTACCCCAGCCAGTGTCAACACGA
CACCGGACAAACCAAAGACGGCCTCTGAGCACAGAAAGTCATCAAAGCCTATCATGGAGAAGAGGCGAAG
GGCAAGAATAAATGAAAGTCTAAGCCAACTGAAAACACTGATTTTGGATGCACTTAAGAAAGATAGCTCC
CGGCATTCCAAGCTAGAGAAGGCAGACATTCTGGAAATGACTGTGAAGCACCTCCGGAACCTGCAGCGGG
CGCAGATGACCGCCGCGCTCAGCACAGACCCGAGCGTGTTGGGGAAATACCGCGCCGGCTTCAGCGAGTG
CATGAACGAGGTGACCCGCTTCCTGTCCACGTGTGAGGGCGTTAACACCGAGGTGCGCACTCGGCTGCTG
GGCCACCTGGCCAACTGCATGACCCAGATCAACGCCATGACCTACCCCGGGCAGGCGCACCCCGCCTTGC
AGGCGCCGCCGCCGCCGCCCCCGTCAGGACCTGCCGGTCCCCAGCACGCGCCATTCGCGCCGCCGCCGCC
GCCGCTTGTGCCCATCCCCGGGGGCGCGGCGCCCCCTCCCGGCAGCGCACCCTGCAAGTTGGGCAGCCAG
GCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATTTGCCTTTC
TCATCCCCAACGGGGCCTTCGCTCACAGCGGCCCGGTCATCCCGGTCTACACCAGCAACAGTGGGACCTC
GGTGGGTCCTAACGCAGTGTCACCTTCCAGTGGCTCCTCGCTCACTTCGGACTCCATGTGGAGACCGTGG
CGGAACTGA

Translation (282 aa):
MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTLILDALKKDSS
RHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLL
GHLANCMTQINAMTYPGQAHPALQAPPPPPPSGPAGPQHAPFAPPPPPLVPIPGGAAPPPGSAPCKLGSQ
AGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAHSGPVIPVYTSNSGTSVGPNAVSPSSGSSLTSDSMWRPW
RN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH