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Report for CCDS3302.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3302.2 Public Homo sapiens 3 MB21D2 24 110 108 CCDS HistoryNCBI Gene:151963Re-query CCDS DB by CCDS ID:3302.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3302.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3302.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392452.3 ENSP00000376246.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392452.3Link to Ensembl Protein Viewer:ENSP00000376246.2Re-query CCDS DB by Nucleotide ID:ENST00000392452Re-query CCDS DB by Protein ID:ENSP00000376246
Original member Current member NCBI NM_178496.4 NP_848591.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178496.4Link to Protein Sequence:NP_848591.2Re-query CCDS DB by Nucleotide ID:NM_178496Re-query CCDS DB by Protein ID:NP_848591Link to BLAST:NP_848591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848591.2 491 Q8IYB1 491 100% 0 0

Chromosomal Locations for CCDS 3302.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 192798386 192799650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 192917630 192917840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGAAGATGGCGGCTCCCACCGCCAACAAGGCAGCCTCCCTGGGCTGTAACAACAAGCCTGCGTTCCCGG
AGCTGGATTTCAGGTCGGGAGCTCGGGTGGAGGAATTGAACAAACTCATCCAAGAATTTACGAAGCACGA
CCAGCGGGAATACGACGACCAGAGAGCGCTGGAGATTCACACAGCCAAGGATTTCATCTTTTCCATGCTG
GGAATGGTGCAAAAGCTGGACCAAAAGCTTCCAGTGGCTAATGAATACCTGTTGCTCTCTGGAGGTGTCC
GGGAAGGCGTGGTGGACCTGGACTTAGATGAGCTTAATGTCTATGCCCGGGGTACTGACTATGATATGGA
CTTTACCCTCTTGGTGCCAGCCCTCAAGCTGCATGACCGTAATCAGCCTGTGACACTCGACATGCGCCAC
TCAGCCTTGTGCCACTCTTGGCTGAGCCTTCGGCTCTTTGATGAGGGGACAATCAGTAAATGGAAAGACT
GCTGCACCATTGTAGATCACATCAATGGTGCCACCAACTACTTCTTCTCACCTACCAAAGTGGCTGACTG
GTTCTATGACTCTATCAGCATTGTCCTATCAGAAATACAGAAGAAACCCCAGCGAGGGATGCCAAAGGTA
GAAAAGGTGGAAAAAAATGGGACCATCATCTCCATCATTCTGGGTGTAGGGAGTAGTCGCATGTTGTATG
ATATTGTCCCTGTGGTATCTTTCAAAGGTTGGCCTGCAGTGGCCCAGAGCTGGCTCATGGAGAACCACTT
TTGGGATGGGAAGATTACTGAGGAAGAGGTCATCAGTGGGTTTTACTTGGTGCCTGCTTGCTCCTACAAG
GGTAAGAAGGACAATGAATGGCGGCTGTCCTTTGCCAGGAGCGAGGTGCAGTTGAAGAAGTGCATCTCCA
GCAGCCTCATGCAGGCCTATCAGGCCTGCAAAGCCATCATCATTAAACTGCTGTCCCGGCCCAAGGCTAT
TAGCCCCTATCACCTGCGGAGCATGATGCTCTGGGCCTGCGACAGACTTCCTGCCAACTACTTGGCTCAA
GAAGACTATGCAGCCCACTTTTTGCTGGGCCTCATCGATGACCTGCAACACTGTCTGGTCAACAAGATGT
GCCCCAATTATTTCATCCCTCAGTGCAACATGCTGGAACATCTGTCTGAGGAGACAGTCATGCTTCACGC
CCGGAAGCTGTCCTCTGTGCGCTCAGACCCGGCAGAGCACTTGCGCACCGCCATTGAGCATGTCAAGGCA
GCCAACCGGCTGACACTGGAGCTCCAGAGGCGAGGTAGCACCACCAGCATCCCCTCTCCACAGTCTGACG
GAGGGGACCCCAACCAGCCTGATGACCGTTTGGCAAAAAAACTGCAGCAGCTAGTGACTGAGAACCCGGG
AAAGTCAATCTCTGTCTTTATCAATCCTGACGATGTCACAAGGCCCCATTTCAGAATTGATGACAAATTT
TTCTGA

Translation (491 aa):
MKMAAPTANKAASLGCNNKPAFPELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSML
GMVQKLDQKLPVANEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRH
SALCHSWLSLRLFDEGTISKWKDCCTIVDHINGATNYFFSPTKVADWFYDSISIVLSEIQKKPQRGMPKV
EKVEKNGTIISIILGVGSSRMLYDIVPVVSFKGWPAVAQSWLMENHFWDGKITEEEVISGFYLVPACSYK
GKKDNEWRLSFARSEVQLKKCISSSLMQAYQACKAIIIKLLSRPKAISPYHLRSMMLWACDRLPANYLAQ
EDYAAHFLLGLIDDLQHCLVNKMCPNYFIPQCNMLEHLSEETVMLHARKLSSVRSDPAEHLRTAIEHVKA
ANRLTLELQRRGSTTSIPSPQSDGGDPNQPDDRLAKKLQQLVTENPGKSISVFINPDDVTRPHFRIDDKF
F


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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