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Report for CCDS5104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5104.1 Public Homo sapiens 6 NT5DC1 24 110 108 CCDS HistoryNCBI Gene:221294Re-query CCDS DB by CCDS ID:5104.1Re-query CCDS DB by GeneID:221294See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319550.9 ENSP00000326858.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319550.9Link to Ensembl Protein Viewer:ENSP00000326858.3Re-query CCDS DB by Nucleotide ID:ENST00000319550Re-query CCDS DB by Protein ID:ENSP00000326858
Original member Current member NCBI NM_152729.3 NP_689942.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152729.3Link to Protein Sequence:NP_689942.2Re-query CCDS DB by Nucleotide ID:NM_152729Re-query CCDS DB by Protein ID:NP_689942Link to BLAST:NP_689942.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689942.2 455 Q5TFE4-1 455 100% 0 0

Chromosomal Locations for CCDS 5104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116100931 116101023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116106244 116106335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116108364 116108435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116110850 116110956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116115691 116115770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116117861 116117945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116221054 116221228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116223034 116223131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116236966 116237084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116238187 116238348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116238955 116239123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116243909 116244024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCTCAGCACTTCTCCCTGGCCGCCTGCGACGTGGTCGGATTCGACCTGGACCACACTCTGTGTCGCT
ACAACCTGCCCGAGAGCGCCCCGCTCATTTATAATAGCTTTGCCCAGTTCCTAGTTAAGGAGAAAGGGTA
CGATAAGGAATTGCTCAATGTGACCCCAGAGGATTGGGATTTCTGTTGCAAAGGTTTGGCATTGGATCTA
GAAGATGGGAACTTCCTTAAACTTGCAAATAATGGCACTGTTCTCAGGGCAAGCCATGGCACCAAGATGA
TGACTCCAGAGGTGCTGGCAGAGGCATATGGCAAGAAAGAGTGGAAGCACTTCTTGTCGGACACTGGAAT
GGCTTGCCGCTCAGGAAAGTATTACTTTTACGACAACTACTTTGACCTGCCAGGAGCTCTTCTGTGTGCC
AGGGTGGTGGACTATTTAACAAAACTGAACAATGGTCAAAAAACATTTGATTTTTGGAAGGATATAGTTG
CTGCTATACAACACAATTATAAAATGTCAGCTTTTAAGGAAAACTGTGGAATATATTTTCCAGAAATAAA
AAGAGATCCAGGCAGATATTTACATAGTTGTCCTGAATCTGTGAAAAAATGGCTTCGACAGCTAAAGAAT
GCTGGGAAAATTCTTCTGTTAATTACCAGTTCTCACAGTGATTACTGTAGACTTCTCTGCGAATATATTC
TTGGGAATGATTTTACAGACCTTTTTGACATTGTGATTACAAATGCATTGAAGCCTGGTTTCTTCTCCCA
CTTACCAAGTCAGAGACCTTTCCGGACACTCGAGAATGATGAGGAGCAGGAGGCACTGCCATCTCTGGAT
AAACCTGGCTGGTACTCCCAAGGGAACGCTGTCCACCTCTATGAACTTCTGAAGAAAATGACTGGCAAAC
CTGAACCCAAGGTTGTTTATTTTGGTGACAGCATGCATTCAGATATTTTCCCAGCTCGTCACTATAGTAA
TTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGGGGATGAAGGCACGAGGAGTCAGAGGCCTGAGGAG
TCAGAGCCTCTAGAGAAGAAAGGAAAATATGAGGGACCAAAAGCAAAACCTTTAAATACTTCATCTAAAA
AATGGGGCTCTTTTTTTATTGATTCAGTTTTGGGACTGGAAAATACAGAAGACTCCTTGGTTTATACATG
GTCTTGTAAGAGAATCAGTACTTACAGCACTATTGCAATTCCAAGTATTGAAGCAATCGCAGAATTACCT
CTGGACTACAAATTTACAAGATTCTCTTCAAGCAATTCAAAAACAGCTGGCTACTATCCAAATCCTCCAC
TGGTCTTATCAAGTGATGAGACACTGATATCCAAATAA

Translation (455 aa):
MAQHFSLAACDVVGFDLDHTLCRYNLPESAPLIYNSFAQFLVKEKGYDKELLNVTPEDWDFCCKGLALDL
EDGNFLKLANNGTVLRASHGTKMMTPEVLAEAYGKKEWKHFLSDTGMACRSGKYYFYDNYFDLPGALLCA
RVVDYLTKLNNGQKTFDFWKDIVAAIQHNYKMSAFKENCGIYFPEIKRDPGRYLHSCPESVKKWLRQLKN
AGKILLLITSSHSDYCRLLCEYILGNDFTDLFDIVITNALKPGFFSHLPSQRPFRTLENDEEQEALPSLD
KPGWYSQGNAVHLYELLKKMTGKPEPKVVYFGDSMHSDIFPARHYSNWETVLILEELRGDEGTRSQRPEE
SEPLEKKGKYEGPKAKPLNTSSKKWGSFFIDSVLGLENTEDSLVYTWSCKRISTYSTIAIPSIEAIAELP
LDYKFTRFSSSNSKTAGYYPNPPLVLSSDETLISK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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