NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34159.1 Public Homo sapiens 5 PLPP1 24 110 108 CCDS HistoryNCBI Gene:8611Re-query CCDS DB by CCDS ID:34159.1Re-query CCDS DB by GeneID:8611See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307259.9 ENSP00000302229.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307259.9Link to Ensembl Protein Viewer:ENSP00000302229.8Re-query CCDS DB by Nucleotide ID:ENST00000307259Re-query CCDS DB by Protein ID:ENSP00000302229
Original member Current member NCBI NM_003711.4 NP_003702.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003711.4Link to Protein Sequence:NP_003702.2Re-query CCDS DB by Nucleotide ID:NM_003711Re-query CCDS DB by Protein ID:NP_003702Link to BLAST:NP_003702.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003702.2 284 O14494-1 284 100% 0 0

Chromosomal Locations for CCDS 34159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55425206 55425334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55425863 55426039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55441851 55441908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55467869 55468149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55475299 55475450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55534572 55534629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTTTGACAAGACGCGGCTGCCGTACGTGGCCCTCGATGTGCTCTGCGTGTTGCTGGCTGGATTGCCTT
TT
GCAATTCTTACTTCAAGGCATACCCCCTTCCAACGAGGAGTATTCTGTAATGATGAGTCCATCAAGTA
C
CCTTACAAAGAAGACACCATACCTTATGCGTTATTAGGTGGAATAATCATTCCATTCAGTATTATCGTT
ATT
ATTCTTGGAGAAACCCTGTCTGTTTACTGTAACCTTTTGCACTCAAATTCCTTTATCAGGAATAACT
AC
ATAGCCACTATTTACAAAGCCATTGGAACCTTTTTATTTGGTGCAGCTGCTAGTCAGTCCCTGACTGA
C
ATTGCCAAGTATTCAATAGGCAGACTGCGGCCTCACTTCTTGGATGTTTGTGATCCAGATTGGTCAAAA
ATC
AACTGCAGCGATGGTTACATTGAATACTACATATGTCGAGGGAATGCAGAAAGAGTTAAGGAAGGCA
G
G
TTGTCCTTCTATTCAGGCCACTCTTCGTTTTCCATGTACTGCATGCTGTTTGTGGCACTTTATCTTCA
A
GCCAGGATGAAGGGAGACTGGGCAAGACTCTTACGCCCCACACTGCAATTTGGTCTTGTTGCCGTATCC
ATT
TATGTGGGCCTTTCTCGAGTTTCTGATTATAAACACCACTGGAGCGATGTGTTGACTGGACTCATTC
AG
GGAGCTCTGGTTGCAATATTAGTTGCTGTATATGTATCGGATTTCTTCAAAGAAAGAACTTCTTTTAA
A
GAAAGAAAAGAGGAGGACTCTCATACAACTCTGCATGAAACACCAACAACTGGGAATCACTATCCGAGC
AAT
CACCAGCCTTGA


Translation (284 aa):
MFDKTRLPYVALDVLCVLLAGLPFAILTSRHTPFQRGVFCNDESIKYPYKEDTIPYALLGGIIIPFSIIV
I
ILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIGRLRPHFLDVCDPDWSK
I
NCSDGYIEYYICRGNAERVKEG
RLSFYSGHSSFSMYCMLFVALYLQARMKGDWARLLRPTLQFGLVAVS
I
YVGLSRVSDYKHHWSDVLTGLIQGALVAILV
AVYVSDFFKERTSFKERKEEDSHTTLHETPTTGNHYPS
N
HQP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser