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Report for CCDS9727.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9727.2 Public Homo sapiens 14 TMEM260 24 110 108 CCDS HistoryNCBI Gene:54916Re-query CCDS DB by CCDS ID:9727.2Re-query CCDS DB by GeneID:54916See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9727.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261556.11 ENSP00000261556.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261556.11Link to Ensembl Protein Viewer:ENSP00000261556.6Re-query CCDS DB by Nucleotide ID:ENST00000261556Re-query CCDS DB by Protein ID:ENSP00000261556
Original member Current member NCBI NM_017799.4 NP_060269.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017799.4Link to Protein Sequence:NP_060269.3Re-query CCDS DB by Nucleotide ID:NM_017799Re-query CCDS DB by Protein ID:NP_060269Link to BLAST:NP_060269.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060269.3 707 Q9NX78-1 707 100% 0 0

Chromosomal Locations for CCDS 9727.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56579915 56580074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56585001 56585032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56585761 56585912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56603815 56603992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56605570 56605683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56609106 56609285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56612245 56612285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56615944 56616027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56617183 56617297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56618594 56618763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56621531 56621702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56625382 56625530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56632995 56633171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56634899 56634952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56636508 56636598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56647243 56647497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGAGTCCCCATGGCGACGGCAGGGGCCAGGCCCAGGGGCGGGCAGTCCGAGTGGGGCTGCGGCGCTCCG
GGGGCATCCGCGGCGGCGTGGCGGTGTTCGCCGCCGTGGCCGCAGTGTTCACCTTCACCCTGCCCCCTTC
GGTACCGGGGGGAGACTCCGGGGAACTGATCACAGCCGCACATGAGCTTGGAGTTGCCCATCCTCCTGGC
TATCCTTTGTTCACGCTGGTGGCTAAACTGGCAATTACACTGTTTCCTTTTGGTTCAATTGCCTACCGCG
TCAATCTTCTCTGTGGCTTATTTGGAGCAGTAGCTGCATCATTACTTTTTTTCACCGTTTTCAGGCTTTC
TGGCTCATCTGCTGGAGGAATCCTTGCTGCGGGGGTGTTTTCATTTTCTCGTCTAACATGGCAGTGGTCC
ATTGCAGCAGAGGTTTTTAGCTTAAACAATCTCTTTGTGGGGCTGCTTATGGCTCTTACTGTACATTTTG
AGGAAGCAGCAACTGCTAAGGAGAGATCAAAGGTAGCTAAAATTGGTGCTTTCTGCTGTGGCCTTAGTTT
ATGTAACCAGCACACAATAATACTCTATGTTTTGTGCATAATACCTTGGATTCTCTTTCAACTTTTAAAA
AAGAAGGAACTCTCCCTGGGCTCTTTGTTGAAGTTGAGCCTGTACTTCTCTGCTGGTTTGCTGCCCTATG
TCCACCTTCCCATCTCATCTTACCTTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACTGCAAGG
ATTTTTGACACATTTTCTCAGGGAAGAATATGGAACCTTCAGCCTGGCCAAATCTGAAATAGGATCCAGT
ATGTCTGAAATACTGCTTTCTCAAGTAACAAATATGAGGACCGAACTCTCATTCAACATCCAAGCCCTTG
CAGTTTGTGCAAATATATGTTTAGCAACAAAGGACAGACAGAATCCATCATTAGTATGGCTTTTTACTGG
AATGTTTTGCATTTATTCATTGTTCTTTGCTTGGAGAGCAAATTTAGATATTTCAAAACCACTTTTCATG
GGTGTGGTGGAACGATTCTGGATGCAGAGCAATGCAGTAGTGGCCGTCCTCGCTGGCATTGGTTTGGCTG
CAGTTGTGTCTGAGACTAACCGAGTGCTGAATAGCAATGGGCTTCAGTGTCTGGAATGGCTTTCTGCAAC
TCTTTTTGTAGTTTACCAAATATATTCTAATTACAGTGTTTGTGACCAAAGGACCAACTATGTGATTGAT
AAGTTCGCAAAGAACCTTCTCACCTCTATGCCTCATGATGCAATTATCTTACTCAGAGGAGATTTGCCAG
GAAATTCTCTCCGTTACATGCATTACTGTGAGGGGTTGAGGCCTGACATTTCATTAGTGGATCAGGAAAT
GATGACTTACGAGTGGTATTTACCCAAGATGGCAAAGCACTTGCCAGGTGTCAACTTTCCTGGGAACCGG
TGGAATCCTGTGGAAGGAATATTACCTAGTGGAATGGTCACATTTAATCTTTATCATTTTCTTGAAGTAA
ATAAACAAAAAGAAACATTTGTTTGCATAGGAATTCATGAAGGCGACCCAACCTGGAAAAAGAACTATTC
ACTTTGGCCATGGGGGTCTTGTGACAAATTAGTTCCTTTGGAGATTGTATTCAACCCTGAGGAATGGATT
AAACTTACAAAAAGTATCTATAACTGGACCGAAGAATATGGAAGGTTTGATCCATCTTCTTGGGAATCTG
TGGCCAATGAAGAAATGTGGCAAGCGAGGATGAAAACACCGTTCTTCATCTTTAACCTGGCAGAAACTGC
TCACATGCCTTCAAAAGTGAAAGCTCAACTCTACGCTCAAGCATATGACCTTTATAAGGAGATTGTCTAT
TTACAAAAGGAGCACCCAGTGAATTGGCACAAGAACTATGCCATCGCCTGTGAGCGGATGCTGCGTCTTC
AGGCAAGAGATGCAGATCCTGAAGTGCTGTTATCGGAAACCATCAGACATTTCCGTCTGTACTCTCAGAA
AGCACCGAATGACCCACAGCAAGCTGATATTTTAGGTGCTCTAAAGCACCTAAGAAAAGAACTGCAAAGT
CTGAGAAATAGGAAAAATGTCTGA

Translation (707 aa):
MSPHGDGRGQAQGRAVRVGLRRSGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAAHELGVAHPPG
YPLFTLVAKLAITLFPFGSIAYRVNLLCGLFGAVAASLLFFTVFRLSGSSAGGILAAGVFSFSRLTWQWS
IAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGAFCCGLSLCNQHTIILYVLCIIPWILFQLLK
KKELSLGSLLKLSLYFSAGLLPYVHLPISSYLNHARWTWGDQTTLQGFLTHFLREEYGTFSLAKSEIGSS
MSEILLSQVTNMRTELSFNIQALAVCANICLATKDRQNPSLVWLFTGMFCIYSLFFAWRANLDISKPLFM
GVVERFWMQSNAVVAVLAGIGLAAVVSETNRVLNSNGLQCLEWLSATLFVVYQIYSNYSVCDQRTNYVID
KFAKNLLTSMPHDAIILLRGDLPGNSLRYMHYCEGLRPDISLVDQEMMTYEWYLPKMAKHLPGVNFPGNR
WNPVEGILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVFNPEEWI
KLTKSIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAHMPSKVKAQLYAQAYDLYKEIVY
LQKEHPVNWHKNYAIACERMLRLQARDADPEVLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQS
LRNRKNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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