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Report for CCDS1298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1298.1 Public Homo sapiens 1 VAMP4 24 110 108 CCDS HistoryNCBI Gene:8674Re-query CCDS DB by CCDS ID:1298.1Re-query CCDS DB by GeneID:8674See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000236192.12 ENSP00000236192.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000236192.12Link to Ensembl Protein Viewer:ENSP00000236192.7Re-query CCDS DB by Nucleotide ID:ENST00000236192Re-query CCDS DB by Protein ID:ENSP00000236192
Original member Current member EBI ENST00000474047.5 ENSP00000435933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474047.5Link to Ensembl Protein Viewer:ENSP00000435933.1Re-query CCDS DB by Nucleotide ID:ENST00000474047Re-query CCDS DB by Protein ID:ENSP00000435933
Original member Current member NCBI NM_003762.5 NP_003753.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003762.5Link to Protein Sequence:NP_003753.2Re-query CCDS DB by Nucleotide ID:NM_003762Re-query CCDS DB by Protein ID:NP_003753Link to BLAST:NP_003753.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003753.2 141 O75379-1 141 100% 0 0

Chromosomal Locations for CCDS 1298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171704506 171704534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171706367 171706418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171709665 171709744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171710714 171710814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171719171 171719221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171728524 171728570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171738349 171738414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGCCTCCCAAGTTTAAGCGCCACCTCAATGATGATGATGTCACAGGTTCTGTGAAAAGTGAAAGGAGAA
ATCTTTTGGAAGATGATTCAGATGAAGAAGAGGACTTTTTTCTAAGGGGACCATCTGGACCAAGATTTGG
ACCTAGAAATGATAAAATTAAGCATGTTCAGAATCAAGTGGATGAAGTTATTGATGTCATGCAAGAAAAT
ATTACAAAGGTAATTGAGAGAGGGGAGAGACTAGATGAACTACAGGACAAATCAGAAAGCTTATCGGATA
ATGCAACAGCTTTTAGCAACAGATCCAAACAACTTCGAAGGCAAATGTGGTGGCGTGGATGCAAAATAAA
AGCCATCATGGCTTTGGTTGCTGCTATCCTTTTGCTAGTGATTATCATTCTTATAGTCATGAAATACCGT
ACTTGA

Translation (141 aa):
MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQEN
ITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIIILIVMKYR
T


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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