NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5580.1 Public Homo sapiens 7 STYXL1 24 110 108 CCDS HistoryNCBI Gene:51657Re-query CCDS DB by CCDS ID:5580.1Re-query CCDS DB by GeneID:51657See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248600.5 ENSP00000248600.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000248600.5Link to Ensembl Protein Viewer:ENSP00000248600.1Re-query CCDS DB by Nucleotide ID:ENST00000248600Re-query CCDS DB by Protein ID:ENSP00000248600
Original member Current member EBI ENST00000359697.8 ENSP00000352726.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359697.8Link to Ensembl Protein Viewer:ENSP00000352726.3Re-query CCDS DB by Nucleotide ID:ENST00000359697Re-query CCDS DB by Protein ID:ENSP00000352726
Original member Current member EBI ENST00000431581.5 ENSP00000392221.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431581.5Link to Ensembl Protein Viewer:ENSP00000392221.1Re-query CCDS DB by Nucleotide ID:ENST00000431581Re-query CCDS DB by Protein ID:ENSP00000392221
Original member Current member NCBI NM_001317785.2 NP_001304714.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001317785.2Link to Protein Sequence:NP_001304714.1Re-query CCDS DB by Nucleotide ID:NM_001317785Re-query CCDS DB by Protein ID:NP_001304714Link to BLAST:NP_001304714.1
Original member Current member NCBI NM_001317786.2 NP_001304715.1 Accepted alive Link to Nucleotide Sequence:NM_001317786.2Link to Protein Sequence:NP_001304715.1Re-query CCDS DB by Nucleotide ID:NM_001317786Re-query CCDS DB by Protein ID:NP_001304715Link to BLAST:NP_001304715.1
Original member Current member NCBI NM_016086.3 NP_057170.1 Accepted alive Link to Nucleotide Sequence:NM_016086.3Link to Protein Sequence:NP_057170.1Re-query CCDS DB by Nucleotide ID:NM_016086Re-query CCDS DB by Protein ID:NP_057170Link to BLAST:NP_057170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304714.1 313 Q9Y6J8-1 313 100% 0 0
NP_001304715.1 313 Q9Y6J8-1 313 100% 0 0
NP_057170.1 313 Q9Y6J8-1 313 100% 0 0

Chromosomal Locations for CCDS 5580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 75996468 75996599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76000890 76001002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76003758 76003855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76005259 76005404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76013742 76013887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76021851 76021992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76028642 76028703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76030421 76030523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCCTGGTTTGCTTTTATGTGAACCAACAGAGCTTTACAACATCCTGAATCAGGCCACAAAACTCTCCA
GATTAACAGACCCCAACTATCTCTGTTTATTGGATGTCCGTTCCAAATGGGAGTATGACGAAAGCCATGT
GATCACTGCCCTTCGAGTGAAGAAGAAAAATAATGAATATCTTCTCCCGGAGTCTGTGGACCTGGAGTGT
GTGAAGTACTGCGTGGTGTATGATAACAACAGCAGCACCCTGGAGATACTCTTAAAAGATGATGATGATG
ATTCAGACTCTGATGGTGATGGCAAAGATCTTGTGCCTCAAGCAGCCATTGAGTATGGCAGGATCCTGAC
CCGCCTCACCCACCACCCCGTCTACATCCTGAAAGGGGGCTATGAGCGCTTCTCAGGCACGTACCACTTT
CTCCGGACCCAGAAGATCATCTGGATGCCTCAGGAACTGGATGCATTTCAGCCATACCCCATTGAAATCG
TGCCAGGGAAGGTCTTCGTTGGCAATTTCAGTCAAGCCTGTGACCCCAAGATTCAGAAGGACTTGAAAAT
CAAAGCCCATGTCAATGTCTCCATGGATACAGGGCCCTTTTTTGCAGGCGATGCTGACAAGCTTCTGCAC
ATCCGGATAGAAGATTCCCCGGAAGCCCAGATTCTTCCCTTCTTACGCCACATGTGTCACTTCATTGAAA
TTCACCATCACCTTGGCTCTGTCATTCTGATCTTTTCCACCCAAGGTATCAGCCGCAGTTGTGCCGCCAT
CATAGCCTACCTCATGCATAGTAACGAGCAGACCTTGCAGAGGTCCTGGGCCTATGTCAAGAAGTGCAAA
AACAACATGTGTCCAAATCGGGGATTGGTGAGCCAGCTGCTGGAATGGGAGAAGACTATCCTTGGAGATT
CCATCACAAACATCATGGATCCGCTCTACTGA

Translation (313 aa):
MPGLLLCEPTELYNILNQATKLSRLTDPNYLCLLDVRSKWEYDESHVITALRVKKKNNEYLLPESVDLEC
VKYCVVYDNNSSTLEILLKDDDDDSDSDGDGKDLVPQAAIEYGRILTRLTHHPVYILKGGYERFSGTYHF
LRTQKIIWMPQELDAFQPYPIEIVPGKVFVGNFSQACDPKIQKDLKIKAHVNVSMDTGPFFAGDADKLLH
IRIEDSPEAQILPFLRHMCHFIEIHHHLGSVILIFSTQGISRSCAAIIAYLMHSNEQTLQRSWAYVKKCK
NNMCPNRGLVSQLLEWEKTILGDSITNIMDPLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH