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Report for CCDS44592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44592.1 Public Homo sapiens 11 SLC39A13 24 110 108 CCDS HistoryNCBI Gene:91252Re-query CCDS DB by CCDS ID:44592.1Re-query CCDS DB by GeneID:91252See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44592.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362021.9 ENSP00000354689.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000362021.9Link to Ensembl Protein Viewer:ENSP00000354689.4Re-query CCDS DB by Nucleotide ID:ENST00000362021Re-query CCDS DB by Protein ID:ENSP00000354689
Original member Current member NCBI NM_001128225.3 NP_001121697.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128225.3Link to Protein Sequence:NP_001121697.2Re-query CCDS DB by Nucleotide ID:NM_001128225Re-query CCDS DB by Protein ID:NP_001121697Link to BLAST:NP_001121697.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121697.2 371 Q96H72-1 371 100% 0 0

Chromosomal Locations for CCDS 44592.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47410095 47410395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47411926 47412039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47412346 47412467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47413400 47413507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47413597 47413686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47414425 47414475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47414777 47414909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47415039 47415159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47415288 47415363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGCCTGGATGTCCCTGCCCTGGCTGTGGCATGGCGGGCCCAAGGCTCCTCTTCCTCACTGCCCTTGCCC
TGGAGCTCTTGGAAAGGGCTGGGGGTTCCCAGCCGGCCCTCCGGAGCCGGGGGACTGCGACGGCCTGTCG
CCTGGACAACAAGGAAAGCGAGTCCTGGGGGGCTCTGCTGAGCGGAGAGCGGCTGGACACCTGGATCTGC
TCCCTCCTGGGTTCCCTCATGGTGGGGCTCAGTGGGGTCTTCCCGTTGCTTGTCATTCCCCTAGAGATGG
GGACCATGCTGCGCTCAGAAGCTGGGGCCTGGCGCCTGAAGCAGCTGCTCAGCTTCGCCCTGGGGGGACT
CTTGGGCAATGTGTTTCTGCATCTGCTGCCCGAAGCCTGGGCCTACACGTGCAGCGCCAGCCCTGGTGGT
GAGGGGCAGAGCCTGCAGCAGCAGCAACAGCTGGGGCTGTGGGTCATTGCTGGCATCCTGACCTTCCTGG
CGTTGGAGAAGATGTTCCTGGACAGCAAGGAGGAGGGGACCAGCCAGGCCCCCAACAAAGACCCCACTGC
TGCTGCCGCCGCGCTCAATGGAGGCCACTGTCTGGCCCAGCCGGCTGCAGAGCCCGGCCTCGGTGCCGTG
GTCCGGAGCATCAAAGTCAGCGGCTACCTCAACCTGCTGGCCAACACCATCGATAACTTCACCCACGGGC
TGGCTGTGGCTGCCAGCTTCCTTGTGAGCAAGAAGATCGGGCTCCTGACAACCATGGCCATCCTCCTGCA
TGAGATCCCCCATGAGGTGGGCGACTTTGCCATCCTGCTCCGGGCCGGCTTTGACCGATGGAGCGCAGCC
AAGCTGCAACTCTCAACAGCGCTGGGGGGCCTACTGGGCGCTGGCTTCGCCATCTGTACCCAGTCCCCCA
AGGGAGTAGTTGGGTGTTCTCCCGCTGCAGAGGAGACGGCAGCCTGGGTCCTGCCCTTCACCTCTGGCGG
CTTTCTCTACATCGCCTTGGTGAACGTGCTCCCTGACCTCTTGGAAGAAGAGGACCCGTGGCGCTCCCTG
CAGCAGCTGCTTCTGCTCTGTGCGGGCATCGTGGTAATGGTGCTGTTCTCGCTCTTCGTGGATTAA

Translation (371 aa):
MPGCPCPGCGMAGPRLLFLTALALELLERAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWIC
SLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASPGG
EGQSLQQQQQLGLWVIAGILTFLALEKMFLDSKEEGTSQAPNKDPTAAAAALNGGHCLAQPAAEPGLGAV
VRSIKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILLRAGFDRWSAA
KLQLSTALGGLLGAGFAICTQSPKGVVGCSPAAEETAAWVLPFTSGGFLYIALVNVLPDLLEEEDPWRSL
QQLLLLCAGIVVMVLFSLFVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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