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Report for CCDS2412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2412.1 Public Homo sapiens 2 TMBIM1 24 110 108 CCDS HistoryNCBI Gene:64114Re-query CCDS DB by CCDS ID:2412.1Re-query CCDS DB by GeneID:64114See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2412.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258412.8 ENSP00000258412.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258412.8Link to Ensembl Protein Viewer:ENSP00000258412.3Re-query CCDS DB by Nucleotide ID:ENST00000258412Re-query CCDS DB by Protein ID:ENSP00000258412
Original member Current member EBI ENST00000396809.6 ENSP00000380025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396809.6Link to Ensembl Protein Viewer:ENSP00000380025.2Re-query CCDS DB by Nucleotide ID:ENST00000396809Re-query CCDS DB by Protein ID:ENSP00000380025
Original member Current member EBI ENST00000444881.5 ENSP00000409738.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444881.5Link to Ensembl Protein Viewer:ENSP00000409738.1Re-query CCDS DB by Nucleotide ID:ENST00000444881Re-query CCDS DB by Protein ID:ENSP00000409738
Original member Current member NCBI NM_001321427.2 NP_001308356.1 Accepted alive Link to Nucleotide Sequence:NM_001321427.2Link to Protein Sequence:NP_001308356.1Re-query CCDS DB by Nucleotide ID:NM_001321427Re-query CCDS DB by Protein ID:NP_001308356Link to BLAST:NP_001308356.1
Original member Current member NCBI NM_001321428.2 NP_001308357.1 Accepted alive Link to Nucleotide Sequence:NM_001321428.2Link to Protein Sequence:NP_001308357.1Re-query CCDS DB by Nucleotide ID:NM_001321428Re-query CCDS DB by Protein ID:NP_001308357Link to BLAST:NP_001308357.1
Original member Current member NCBI NM_001321429.2 NP_001308358.1 Accepted alive Link to Nucleotide Sequence:NM_001321429.2Link to Protein Sequence:NP_001308358.1Re-query CCDS DB by Nucleotide ID:NM_001321429Re-query CCDS DB by Protein ID:NP_001308358Link to BLAST:NP_001308358.1
Original member Current member NCBI NM_001321430.2 NP_001308359.1 Accepted alive Link to Nucleotide Sequence:NM_001321430.2Link to Protein Sequence:NP_001308359.1Re-query CCDS DB by Nucleotide ID:NM_001321430Re-query CCDS DB by Protein ID:NP_001308359Link to BLAST:NP_001308359.1
Original member Current member NCBI NM_001321432.2 NP_001308361.1 Accepted alive Link to Nucleotide Sequence:NM_001321432.2Link to Protein Sequence:NP_001308361.1Re-query CCDS DB by Nucleotide ID:NM_001321432Re-query CCDS DB by Protein ID:NP_001308361Link to BLAST:NP_001308361.1
Original member Current member NCBI NM_001321433.2 NP_001308362.1 Accepted alive Link to Nucleotide Sequence:NM_001321433.2Link to Protein Sequence:NP_001308362.1Re-query CCDS DB by Nucleotide ID:NM_001321433Re-query CCDS DB by Protein ID:NP_001308362Link to BLAST:NP_001308362.1
Original member Current member NCBI NM_001321435.2 NP_001308364.1 Accepted alive Link to Nucleotide Sequence:NM_001321435.2Link to Protein Sequence:NP_001308364.1Re-query CCDS DB by Nucleotide ID:NM_001321435Re-query CCDS DB by Protein ID:NP_001308364Link to BLAST:NP_001308364.1
Original member Current member NCBI NM_001321436.2 NP_001308365.1 Accepted alive Link to Nucleotide Sequence:NM_001321436.2Link to Protein Sequence:NP_001308365.1Re-query CCDS DB by Nucleotide ID:NM_001321436Re-query CCDS DB by Protein ID:NP_001308365Link to BLAST:NP_001308365.1
Original member Current member NCBI NM_022152.6 NP_071435.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022152.6Link to Protein Sequence:NP_071435.2Re-query CCDS DB by Nucleotide ID:NM_022152Re-query CCDS DB by Protein ID:NP_071435Link to BLAST:NP_071435.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308356.1 311 Q969X1 311 100% 0 0
NP_001308357.1 311 Q969X1 311 100% 0 0
NP_001308358.1 311 Q969X1 311 100% 0 0
NP_001308359.1 311 Q969X1 311 100% 0 0
NP_001308361.1 311 Q969X1 311 100% 0 0
NP_001308362.1 311 Q969X1 311 100% 0 0
NP_001308364.1 311 Q969X1 311 100% 0 0
NP_001308365.1 311 Q969X1 311 100% 0 0
NP_071435.2 311 Q969X1 311 100% 0 0

Chromosomal Locations for CCDS 2412.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218275475 218275621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218276026 218276079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218277004 218277099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218277366 218277453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218277633 218277670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218277935 218277974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218278515 218278565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218279038 218279091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218279289 218279353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218280026 218280126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218281940 218282141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGTCCAACCCCAGCGCCCCACCACCATATGAAGACCGCAACCCCCTGTACCCAGGCCCTCCGCCCCCTG
GGGGCTATGGGCAGCCATCTGTCCTGCCAGGAGGGTATCCTGCCTACCCTGGCTACCCGCAGCCTGGCTA
CGGTCACCCTGCTGGCTACCCACAGCCCATGCCCCCCACCCACCCGATGCCCATGAACTACGGCCCAGGC
CATGGCTATGATGGGGAGGAGAGAGCAGTGAGTGATAGCTTCGGGCCTGGAGAGTGGGATGACCGGAAAG
TGCGACACACTTTTATCCGAAAGGTTTACTCCATCATCTCCGTGCAGCTGCTCATCACTGTGGCCATCAT
TGCTATCTTCACCTTTGTGGAACCTGTCAGCGCCTTTGTGAGGAGAAATGTGGCTGTCTACTACGTGTCC
TATGCTGTCTTCGTTGTCACCTACCTGATCCTTGCCTGCTGCCAGGGACCCAGACGCCGTTTCCCATGGA
ACATCATTCTGCTGACCCTTTTTACTTTTGCCATGGGCTTCATGACGGGCACCATTTCCAGTATGTACCA
AACCAAAGCCGTCATCATTGCAATGATCATCACTGCGGTGGTATCCATTTCAGTCACCATCTTCTGCTTT
CAGACCAAGGTGGACTTCACCTCGTGCACAGGCCTCTTCTGTGTCCTGGGAATTGTGCTCCTGGTGACTG
GGATTGTCACTAGCATTGTGCTCTACTTCCAATACGTTTACTGGCTCCACATGCTCTATGCTGCTCTGGG
GGCCATTTGTTTCACCCTGTTCCTGGCTTACGACACACAGCTGGTCCTGGGGAACCGGAAGCACACCATC
AGCCCCGAGGACTACATCACTGGCGCCCTGCAGATTTACACAGACATCATCTACATCTTCACCTTTGTGC
TGCAGCTGATGGGGGATCGCAATTAA

Translation (311 aa):
MSNPSAPPPYEDRNPLYPGPPPPGGYGQPSVLPGGYPAYPGYPQPGYGHPAGYPQPMPPTHPMPMNYGPG
HGYDGEERAVSDSFGPGEWDDRKVRHTFIRKVYSIISVQLLITVAIIAIFTFVEPVSAFVRRNVAVYYVS
YAVFVVTYLILACCQGPRRRFPWNIILLTLFTFAMGFMTGTISSMYQTKAVIIAMIITAVVSISVTIFCF
QTKVDFTSCTGLFCVLGIVLLVTGIVTSIVLYFQYVYWLHMLYAALGAICFTLFLAYDTQLVLGNRKHTI
SPEDYITGALQIYTDIIYIFTFVLQLMGDRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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