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Report for CCDS10527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10527.1 Public Homo sapiens 16 NAGPA 24 110 108 CCDS HistoryNCBI Gene:51172Re-query CCDS DB by CCDS ID:10527.1Re-query CCDS DB by GeneID:51172See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312251.8 ENSP00000310998.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312251.8Link to Ensembl Protein Viewer:ENSP00000310998.3Re-query CCDS DB by Nucleotide ID:ENST00000312251Re-query CCDS DB by Protein ID:ENSP00000310998
Original member Current member NCBI NM_016256.4 NP_057340.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016256.4Link to Protein Sequence:NP_057340.2Re-query CCDS DB by Nucleotide ID:NM_016256Re-query CCDS DB by Protein ID:NP_057340Link to BLAST:NP_057340.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057340.2 515 Q9UK23-1 515 100% 0 0

Chromosomal Locations for CCDS 10527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5025478 5025685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5027135 5027198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5027278 5027379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5027846 5027893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5027980 5028185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5028880 5029008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5030385 5030493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5031745 5031884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5033273 5033728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5033829 5033914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGCGACCTCCACGGGTCGCTGGCTTCTCCTCCGGCTTGCACTATTCGGCTTCCTCTGGGAAGCGTCCG
GCGGCCTCGACTCGGGGGCCTCCCGCGACGACGACTTGCTACTGCCCTATCCACGCGCGCGCGCGCGCCT
CCCCCGGGACTGCACACGGGTGCGCGCCGGCAACCGCGAGCACGAGAGTTGGCCTCCGCCTCCCGCGACT
CCCGGCGCCGGCGGTCTGGCCGTGCGCACCTTCGTGTCGCACTTCAGGGACCGCGCGGTGGCCGGCCACC
TGACGCGGGCCGTTGAGCCCCTGCGCACCTTCTCGGTGCTGGAGCCCGGTGGACCCGGCGGCTGCGCGGC
GAGACGACGCGCCACCGTGGAGGAGACGGCGCGGGCGGCCGACTGCCGTGTCGCCCAGAACGGCGGCTTC
TTCCGCATGAACTCGGGCGAGTGCCTGGGGAACGTGGTGAGCGACGAGCGGCGGGTGAGCAGCTCCGGGG
GGCTGCAGAACGCGCAGTTCGGGATCCGCCGCGACGGGACCCTGGTCACCGGGTACCTGTCTGAGGAGGA
GGTGCTGGACACTGAGAACCCATTTGTGCAGCTGCTGAGTGGGGTCGTGTGGCTGATTCGTAATGGAAGC
ATCTACATCAACGAGAGCCAAGCCACAGAGTGTGACGAGACACAGGAGACAGGTTCCTTTAGCAAATTTG
TGAATGTGATATCAGCCAGGACGGCCATTGGCCACGACCGGAAAGGGCAGCTGGTGCTCTTTCATGCAGA
CGGCCAAACGGAGCAGCGTGGCATCAACCTGTGGGAAATGGCGGAGTTCCTGCTGAAACAGGACGTGGTC
AACGCCATCAACCTGGATGGGGGTGGCTCTGCCACCTTTGTGCTCAACGGGACCTTGGCCAGTTACCCGT
CAGATCACTGCCAGGACAACATGTGGCGCTGTCCCCGCCAAGTGTCCACCGTGGTGTGTGTGCACGAACC
CCGCTGCCAGCCGCCTGACTGCCACGGCCACGGGACCTGCGTGGACGGGCACTGCCAATGCACCGGGCAC
TTCTGGCGGGGTCCCGGCTGTGATGAGCTGGACTGTGGCCCCTCTAACTGCAGCCAGCACGGACTGTGCA
CGGAGACCGGCTGCCGCTGTGATGCCGGATGGACCGGGTCCAACTGCAGTGAAGAGTGTCCCCTTGGCTG
GCATGGGCCGGGCTGCCAGAGGCCTTGTAAGTGTGAGCACCATTGTCCCTGTGACCCCAAGACTGGCAAC
TGCAGCGTCTCCAGAGTAAAGCAGTGTCTCCAGCCACCTGAAGCCACCCTGAGGGCGGGAGAACTCTCCT
TTTTCACCAGGACCGCCTGGCTAGCCCTCACCCTGGCGCTGGCCTTCCTCCTGCTGATCAGCACTGCAGC
AAACCTGTCCTTGCTCCTGTCCAGAGCAGAGAGGAACCGGCGCCTGCATGGGGACTATGCATACCACCCG
CTGCAGGAGATGAACGGGGAGCCTCTGGCCGCAGAGAAGGAGCAGCCAGGGGGCGCCCACAACCCCTTCA
AGGACTGA

Translation (515 aa):
MATSTGRWLLLRLALFGFLWEASGGLDSGASRDDDLLLPYPRARARLPRDCTRVRAGNREHESWPPPPAT
PGAGGLAVRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGF
FRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGS
IYINESQATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVV
NAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRQVSTVVCVHEPRCQPPDCHGHGTCVDGHCQCTGH
FWRGPGCDELDCGPSNCSQHGLCTETGCRCDAGWTGSNCSEECPLGWHGPGCQRPCKCEHHCPCDPKTGN
CSVSRVKQCLQPPEATLRAGELSFFTRTAWLALTLALAFLLLISTAANLSLLLSRAERNRRLHGDYAYHP
LQEMNGEPLAAEKEQPGGAHNPFKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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